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The map label for this gene is rpoE [C]

Identifier: 148821375

GI number: 148821375

Start: 213344

End: 214456

Strand: Reverse

Name: rpoE [C]

Synonym: TBFG_10183

Alternate gene names: 148821375

Gene position: 214456-213344 (Counterclockwise)

Preceding gene: 148821381

Following gene: 148821373

Centisome position: 4.85

GC content: 65.77

Gene sequence:

>1113_bases
ATGCGCACATCGCCGATGCCCGCGAAATTCCGTTCAGTCCGGGTGGTAGTCATTACCGGGAGCGTAACGGCTGCTCCGGT
GAGAGTGTCGGAGACTCTGCGTAGGCTCATTGACGTGAGTGTGCTCGCAGAAAACTCTGGCCGCGAGCCCGCCGACGAAC
GGCGCGGGGACTTCTCCGCCCACACCGAGCCCTACCGGCGTGAACTGCTCGCACACTGCTATCGCATGACTGGCTCGCTG
CACGACGCGGAAGACCTTGTTCAGGAGACGCTGCTGCGGGCCTGGAAGGCCTATGAGGGCTTCGCGGGCAAGTCCTCGCT
ACGCACCTGGCTGCATCGGATCGCCACCAACACCTGCCTGACGGCGTTGGAGGGCCGTCGACGCCGGCCGTTGCCGACGG
GGCTCGGGCGGCCGAGTGCCGATCCGTCCGGGGAGTTGGTGGAACGTCGAGAGGTGTCCTGGCTGGAGCCGCTGCCGGAC
GTGACGGACGACCCTGCTGATCCCTCAACGATCGTCGGGAACCGGGAATCGGTGCGGTTGGCCTTTGTGGCGGCTCTGCA
GCACCTCTCACCCCGGCAGCGAGCCGTACTGCTGCTGCGCGACGTGCTGCAGTGGAAATCGGCCGAGGTGGCCGACGCGA
TCGGTACCAGCACCGTCGCCGTCAATAGCCTGCTGCAGCGGGCCCGCTCTCAGCTGCAGACGGTCCGGCCCAGCGCCGCC
GACCGGTTGTCCGCGCCGGATTCACCCGAGGCGCAAGACCTGTTGGCCCGCTATATCGCCGCGTTCGAGGCTTATGACAT
CGACCGGTTGGTCGAGCTGTTCACCGCCGAGGCGATCTGGGAAATGCCGCCGTATACCGGCTGGTACCAGGGCGCACAGG
CCATCGTCACCCTCATTCACCAACAGTGCCCCGCCTATTCGCCTGGCGATATGCGCCTGATTTCGTTGATCGCCAACGGC
CAGCCCGCCGCGGCCATGTACATGCGTGCCGGTGACGTGCACCTGCCTTTTCAGCTACACGTGCTGGACATGGCCGCCGA
CCGCGTGTCACACGTGGTGGCCTTCCTCGACACCACCTTGTTCCCGAAATTCGGCCTGCCCGATTCGCTGTGA

Upstream 100 bases:

>100_bases
CTGCGCGACATGGTCGTAGCGGCGGGCATGCTCGCCCAGACCATGGGCCAGCACGACCACCGCTTGCGGCGCGGTGTCCG
GCGTCCAGACGTCGTAGACG

Downstream 100 bases:

>100_bases
TGGCGAACGTGACGTCATGACCGCCACCGTCGAGATAAGGCGTGCGGCCGACCGGGCGGTCACCACGACGTCCTGGCTGA
AATCCCGGCATTCGTTCTCA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Factor Sigma-; ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Subunit; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-70 Factor SigG; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Region 2 Domain-Containing Protein; Sigma Factor Sigma; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Sigma Factor; ECF Family Sigma Factor; Sigma-; RNA Polymerase ECF-Type Sigma Factor SigG; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Subunit; ECF Sigma Factor; RNA Polymerase Sigma-; Sigma-70 Factor Sigg; RNA Polymerase Sigma-70 Factor Family Protein

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSL
HDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD
VTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANG
QPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL

Sequences:

>Translated_370_residues
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSL
HDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD
VTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANG
QPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL
>Mature_370_residues
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSL
HDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD
VTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANG
QPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40983; Mature: 40983

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA
CCCCCCCCHHHCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC
HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
HHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHH
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH
HHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL
HHCCCCCCCCHHHHHHHHCCCCHHHHHEECCCEECCEEEHHHHHHHHHHHHHHHHHHHHH
FPKFGLPDSL
CCCCCCCCCC
>Mature Secondary Structure
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA
CCCCCCCCHHHCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC
HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
HHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHH
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH
HHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL
HHCCCCCCCCHHHHHHHHCCCCHHHHHEECCCEECCEEEHHHHHHHHHHHHHHHHHHHHH
FPKFGLPDSL
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA