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The map label for this gene is yncC [C]

Identifier: 148821357

GI number: 148821357

Start: 194460

End: 195254

Strand: Reverse

Name: yncC [C]

Synonym: TBFG_10166

Alternate gene names: 148821357

Gene position: 195254-194460 (Counterclockwise)

Preceding gene: 148821371

Following gene: 148821355

Centisome position: 4.41

GC content: 65.53

Gene sequence:

>795_bases
TTGATAAAGCATGATGTTGTCTGGGTCACACTATGGCCTGAGCGGCCCAACAACAAGCCCCCGCCAAGCCCCCGGCAAGT
CCCCGGCAATCCCGGCCCGACCCTGAAAGTCCTGGCAAGCCACGTGAACGCACCTCTATCGGCGAAGCCGCGGAGCCAGC
TTCCCCTGCGCCGGGCACAGTTGTCCGACGAGGTCGCGGGCCACCTGCGGGCCGCCATCATGTCGGGCGCCCTGCGCTCT
GGAACGTTCATCCGTCTGGACGAGACGGCAGCCGAGCTCGGAGTCAGCGTCACGCCGGTGCGGGAGGCGCTGCTGAAACT
GCGCGGTGAGGGGATGGTCGGGCTGGAGCCACATCGCGGCCACGTGGTGCTGCCGTTGACCCGCCAAGACATCGACGACA
TTTTCTGGCTGCAGGCCACCATTGCCCAAGAACTTGCCACATCGGCCACCGCTCACATCACCGACGTTGAGATCGACGAG
CTGGACCGCATCAACAATGCGCTGGCCGGTGCTATCGGGTCCGGTGATGCCAAAACCATCGCGTCGATCGAGTTCGCGTT
CCACCGCGTCTTCAACAAAGCGAGCCGCCGGATCAAGTTGGCCTGGTTCCTGCTTAATGCCGCGCGCTATATGGGCGCAG
GTGTTCGCGGCCGACCCGCGATGGGGCGCGGACGCGGTGAACAGTCATCGGCAGCTGATCGCCGCGCTGCGCCGCCGCGA
CACAGCCGCCGTAATCGAGCACACCGTCTGGCAGTTCACCGATGGGGCACGCAGGCTGACGGAGGCCCTGGCTGA

Upstream 100 bases:

>100_bases
CTAGTGTTAGCGCCCGCGTCAGGTGACTGGCCAGTTGCGCGGTCAACTATCCCTTCCTTCCCTTCCTTTCACTTGCGCAT
CCCTTGCGCCAGGTTGATAT

Downstream 100 bases:

>100_bases
GACCGAAGTCTTCGGCTGAGCCCGCACATGCCTTAGCTGGCCGCCAGCTGCTCGGCGCGCTGCTTGAGATTTTCGGCGAG
ATGCTCCAGGACGTTGTTGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; Transcriptional Regulator Gntr Family; Regulatory Protein GntR HTH; GntR Domain-Containing Protein; Gntr Family Transcriptional Regulator; Transcriptional Regulator MdcY Family Protein; GntR Family Regulatory Protein; GntR-Family Transcriptional Regulator; Mn-Dependent Transcriptional Regulator; GntR Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR-Family; GntR Domain Protein; Transcription Regulator; Regulator PutR For Proline Utilization GntR Family

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQLSDEVAGHLRAAIMSGALRS
GTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRGHVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDE
LDRINNALAGAIGSGDAKTIASIEFAFHRVFNKASRRIKLAWFLLNAARYMGAGVRGRPAMGRGRGEQSSAADRRAAPPR
HSRRNRAHRLAVHRWGTQADGGPG

Sequences:

>Translated_264_residues
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQLSDEVAGHLRAAIMSGALRS
GTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRGHVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDE
LDRINNALAGAIGSGDAKTIASIEFAFHRVFNKASRRIKLAWFLLNAARYMGAGVRGRPAMGRGRGEQSSAADRRAAPPR
HSRRNRAHRLAVHRWGTQADGGPG
>Mature_264_residues
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQLSDEVAGHLRAAIMSGALRS
GTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRGHVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDE
LDRINNALAGAIGSGDAKTIASIEFAFHRVFNKASRRIKLAWFLLNAARYMGAGVRGRPAMGRGRGEQSSAADRRAAPPR
HSRRNRAHRLAVHRWGTQADGGPG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28710; Mature: 28710

Theoretical pI: Translated: 11.70; Mature: 11.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQ
CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
LSDEVAGHLRAAIMSGALRSGTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRG
HHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC
HVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDELDRINNALAGAIGSGDAKTI
EEEEEECHHCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHCCCCCCCHHH
ASIEFAFHRVFNKASRRIKLAWFLLNAARYMGAGVRGRPAMGRGRGEQSSAADRRAAPPR
HHHHHHHHHHHHHHHCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
HSRRNRAHRLAVHRWGTQADGGPG
HHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQ
CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
LSDEVAGHLRAAIMSGALRSGTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRG
HHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC
HVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDELDRINNALAGAIGSGDAKTI
EEEEEECHHCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHCCCCCCCHHH
ASIEFAFHRVFNKASRRIKLAWFLLNAARYMGAGVRGRPAMGRGRGEQSSAADRRAAPPR
HHHHHHHHHHHHHHHCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
HSRRNRAHRLAVHRWGTQADGGPG
HHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA