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The map label for this gene is cspA

Identifier: 148663511

GI number: 148663511

Start: 4096775

End: 4096978

Strand: Reverse

Name: cspA

Synonym: MRA_3683

Alternate gene names: 148663511

Gene position: 4096978-4096775 (Counterclockwise)

Preceding gene: 148663515

Following gene: 148663510

Centisome position: 92.69

GC content: 59.8

Gene sequence:

>204_bases
ATGCCACAGGGAACTGTGAAGTGGTTCAACGCGGAGAAGGGGTTCGGCTTTATCGCCCCCGAAGACGGTTCCGCGGATGT
ATTTGTCCACTACACGGAGATCCAGGGAACGGGCTTCCGCACCCTTGAAGAAAACCAGAAGGTCGAGTTCGAGATCGGCC
ACAGCCCTAAGGGCCCCCAGGCCACCGGAGTCCGCTCGCTCTGA

Upstream 100 bases:

>100_bases
GGGTGAAGTTCCGGCGACTCGGCGAGGTATGGCGGCCGCAGCTGGCCCGGGGCACCGAAAGGCGGTGCACCGCACCCAGA
AGAAAAGGAAAGATCGAGAA

Downstream 100 bases:

>100_bases
GTTACCCCCGCGAGCAGACGCAAAAAGCCCCCAAAACGGTTCCGTTTTGGGGGCTTTACGTCTGCTCGCCACATGGCGCG
CTGCCGCCGCGCCGGATGCC

Product: putative cold shock protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQATGVRSL

Sequences:

>Translated_67_residues
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQATGVRSL
>Mature_66_residues
PQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQATGVRSL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=65.625, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=63.0769230769231, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=64.0625, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=61.5384615384615, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=60.9375, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=62.2950819672131, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=54.8387096774194, Blast_Score=77, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=50.7936507936508, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPA_MYCBO (P63849)

Other databases:

- EMBL:   BX248346
- RefSeq:   NP_857311.1
- ProteinModelPortal:   P63849
- SMR:   P63849
- EnsemblBacteria:   EBMYCT00000014250
- GeneID:   1093273
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb3672c
- GeneTree:   EBGT00050000015771
- HOGENOM:   HBG717773
- OMA:   ASESVHI
- ProtClustDB:   CLSK792621
- BioCyc:   MBOV233413:MB3672C-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7370; Mature: 7239

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ
CCCCCEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCEECCCCCEEEEEECCCCCCCC
ATGVRSL
CCCCCCC
>Mature Secondary Structure 
PQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ
CCCCEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCEECCCCCEEEEEECCCCCCCC
ATGVRSL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972