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The map label for this gene is rnz [H]

Identifier: 148662240

GI number: 148662240

Start: 2716665

End: 2717486

Strand: Direct

Name: rnz [H]

Synonym: MRA_2431

Alternate gene names: 148662240

Gene position: 2716665-2717486 (Clockwise)

Preceding gene: 148662238

Following gene: 148662242

Centisome position: 61.46

GC content: 66.06

Gene sequence:

>822_bases
ATGCTTGAGATCACGTTGCTCGGAACTGGGAGCCCCATTCCCGACCCGGACCGTGCCGGACCATCCACTCTGGTGCGGGC
CGGCGCGCAGGCGTTCCTGGTGGACTGCGGTCGCGGCGTGCTGCAACGCGCGGCGGCCGTCGGTGTGGGCGCCGCAGGAT
TGTCGGCGGTGCTGCTCACCCATTTACACGGCGACGTGCTTATCACCAGTTGGGTCACCAACTTCGCTGCTGATCCCGCG
CCCTTGCCGATCATCGGACCGCCGGGCACCGCCGAAGTGGTGGAGGCGACGTTGAAGGCATTCGGTCACGACATCGGCTA
TCGGATCGCCCACCACGCCGATCTGACGACACCACCACCGATCGAGGTGCACGAATACACCGCAGGCCCAGCTTGGGATC
GCGACGGCGTGACAATCCGGGTGGCCCCTACCGATCATCGGCCGGTCACGCCGACGATCGGATTCCGGATCGAATCCGAC
GGTGCTTCGGTGGTGCTCGCCGGTGACACCGTTCCTTGTGACAGCCTCGACCAGCTGGCCGCCGGAGCGGATGCGTTGGT
ACACACGGTGATCCGCAAAGACATCGTCACGCAGATCCCGCAGCAACGGGTCAAGGACATCTGCGATTACCACTCGTCGG
TGCAGGAAGCCGCCGCAACCGCGAACCGCGCAGGGGTGGGAACCCTGGTCATGACGCACTATGTGCCGGCTATCGGGCCC
GGACAAGAAGAACAGTGGCGGGCGCTGGCCGCGACCGAGTTCAGCGGGCGGATCGAGGTCGGCAACGACCTACACCGAGT
CGAGGTGCACCCGCGGCGCTAG

Upstream 100 bases:

>100_bases
CGCCCATGTCGGCCGCATCCTCGAGGCTAAAACTCGTTGGCCATCAGCCGAATCGGTCGATCGGGGCCGCTGGATCCATC
GAGCTTGTCAGGATAGGGCC

Downstream 100 bases:

>100_bases
CACGCCAGCTATGACCAACCAGCCCCGACACCAGGGCGATCGATAAGGCAAGAAGTAGATCGCCCGAACCAGCGCCGGGT
CCGTGCTGACCCTCGGGCGC

Product: ribonuclease Z

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLEITLLGTGSPIPDPDRAGPSTLVRAGAQAFLVDCGRGVLQRAAAVGVGAAGLSAVLLTHLHGDVLITSWVTNFAADPA
PLPIIGPPGTAEVVEATLKAFGHDIGYRIAHHADLTTPPPIEVHEYTAGPAWDRDGVTIRVAPTDHRPVTPTIGFRIESD
GASVVLAGDTVPCDSLDQLAAGADALVHTVIRKDIVTQIPQQRVKDICDYHSSVQEAAATANRAGVGTLVMTHYVPAIGP
GQEEQWRALAATEFSGRIEVGNDLHRVEVHPRR

Sequences:

>Translated_273_residues
MLEITLLGTGSPIPDPDRAGPSTLVRAGAQAFLVDCGRGVLQRAAAVGVGAAGLSAVLLTHLHGDVLITSWVTNFAADPA
PLPIIGPPGTAEVVEATLKAFGHDIGYRIAHHADLTTPPPIEVHEYTAGPAWDRDGVTIRVAPTDHRPVTPTIGFRIESD
GASVVLAGDTVPCDSLDQLAAGADALVHTVIRKDIVTQIPQQRVKDICDYHSSVQEAAATANRAGVGTLVMTHYVPAIGP
GQEEQWRALAATEFSGRIEVGNDLHRVEVHPRR
>Mature_273_residues
MLEITLLGTGSPIPDPDRAGPSTLVRAGAQAFLVDCGRGVLQRAAAVGVGAAGLSAVLLTHLHGDVLITSWVTNFAADPA
PLPIIGPPGTAEVVEATLKAFGHDIGYRIAHHADLTTPPPIEVHEYTAGPAWDRDGVTIRVAPTDHRPVTPTIGFRIESD
GASVVLAGDTVPCDSLDQLAAGADALVHTVIRKDIVTQIPQQRVKDICDYHSSVQEAAATANRAGVGTLVMTHYVPAIGP
GQEEQWRALAATEFSGRIEVGNDLHRVEVHPRR

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA [H]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR013471 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: =3.1.26.11 [H]

Molecular weight: Translated: 28707; Mature: 28707

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEITLLGTGSPIPDPDRAGPSTLVRAGAQAFLVDCGRGVLQRAAAVGVGAAGLSAVLLT
CEEEEEEECCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HLHGDVLITSWVTNFAADPAPLPIIGPPGTAEVVEATLKAFGHDIGYRIAHHADLTTPPP
HHCCCCHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCC
IEVHEYTAGPAWDRDGVTIRVAPTDHRPVTPTIGFRIESDGASVVLAGDTVPCDSLDQLA
CEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHH
AGADALVHTVIRKDIVTQIPQQRVKDICDYHSSVQEAAATANRAGVGTLVMTHYVPAIGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
GQEEQWRALAATEFSGRIEVGNDLHRVEVHPRR
CCHHHHHHHHHHCCCCEEEECCCEEEEEECCCC
>Mature Secondary Structure
MLEITLLGTGSPIPDPDRAGPSTLVRAGAQAFLVDCGRGVLQRAAAVGVGAAGLSAVLLT
CEEEEEEECCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HLHGDVLITSWVTNFAADPAPLPIIGPPGTAEVVEATLKAFGHDIGYRIAHHADLTTPPP
HHCCCCHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCC
IEVHEYTAGPAWDRDGVTIRVAPTDHRPVTPTIGFRIESDGASVVLAGDTVPCDSLDQLA
CEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHH
AGADALVHTVIRKDIVTQIPQQRVKDICDYHSSVQEAAATANRAGVGTLVMTHYVPAIGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
GQEEQWRALAATEFSGRIEVGNDLHRVEVHPRR
CCHHHHHHHHHHCCCCEEEECCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]