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The map label for this gene is ybdB [C]

Identifier: 148661653

GI number: 148661653

Start: 2106809

End: 2107231

Strand: Direct

Name: ybdB [C]

Synonym: MRA_1858

Alternate gene names: 148661653

Gene position: 2106809-2107231 (Clockwise)

Preceding gene: 148661640

Following gene: 148661654

Centisome position: 47.67

GC content: 64.54

Gene sequence:

>423_bases
GTGCAGCCATCGCCGGACTCACCCGCTCCGCTGAATGTCACCGTGCCGTTCGACAGCGAGTTGGGTTTGCAATTCACCGA
ACTGGGTCCCGACGGGGCCCGAGCGCAGCTCGACGTCCGGCCCAAGTTGTTGCAGCTGACGGGCGTCGTGCACGGCGGTG
TCTACTGCGCGATGATCGAGAGCATCGCCAGCATGGCAGCCTTTGCCTGGCTCAATTCGCACGGCGAAGGCGGGAGTGTG
GTCGGCGTTAACAATAATACGGATTTCGTGCGCTCCATCAGCTCAGGGATGGTGTATGGCACCGCCGAACCGCTGCATCG
GGGTCGGCGGCAACAGCTGTGGCTGGTCACCATCACCGACGACACCGACCGGGTGGTCGCCCGCGGCCAAGTGCGGCTGC
AGAACCTCGAGGCGCGGCCTTAA

Upstream 100 bases:

>100_bases
GCGGCCGAGTCCTGAGGGCTGCAGTGACCCCCGGTCGACTCGATCGGCGAGCCCCGTGCCTTGGTGCACGGGGCTCGCCC
GTTGGTGTAGACACAAGGAC

Downstream 100 bases:

>100_bases
CCCGCTCGAAACCGTTGAACCTGCCGCGGCGTGGCAGGATCGCAGAGCATGCGCCTGACGCCGCACGAACAGGAGCGTTT
GCTGTTGTCCTACGCCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSV
VGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP

Sequences:

>Translated_140_residues
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSV
VGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP
>Mature_140_residues
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSV
VGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase PaaI family

Homologues:

Organism=Escherichia coli, GI1786813, Length=106, Percent_Identity=35.8490566037736, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1787976, Length=107, Percent_Identity=36.4485981308411, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1847_MYCTU (P95162)

Other databases:

- EMBL:   BX842578
- EMBL:   AE000516
- PIR:   G70664
- RefSeq:   NP_216363.1
- RefSeq:   NP_336352.1
- ProteinModelPortal:   P95162
- SMR:   P95162
- EnsemblBacteria:   EBMYCT00000001728
- EnsemblBacteria:   EBMYCT00000073060
- GeneID:   885734
- GeneID:   923717
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT1895
- KEGG:   mtu:Rv1847
- TIGR:   MT1895
- TubercuList:   Rv1847
- GeneTree:   EBGT00050000014719
- HOGENOM:   HBG657960
- OMA:   HGGVYCS
- ProtClustDB:   CLSK871972
- InterPro:   IPR003736
- InterPro:   IPR006683
- TIGRFAMs:   TIGR00369

Pfam domain/function: PF03061 4HBT

EC number: NA

Molecular weight: Translated: 15098; Mature: 15098

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIE
CCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEECCHHEEEEHHHHHCCHHHHHHH
SIASMAAFAWLNSHGEGGSVVGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITD
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCEEEECCHHHHCCCCCEEEEEEEEC
DTDRVVARGQVRLQNLEARP
CCCCEEECCEEEEECCCCCC
>Mature Secondary Structure
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIE
CCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEECCHHEEEEHHHHHCCHHHHHHH
SIASMAAFAWLNSHGEGGSVVGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITD
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCEEEECCHHHHCCCCCEEEEEEEEC
DTDRVVARGQVRLQNLEARP
CCCCEEECCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036