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The map label for this gene is yibD [C]

Identifier: 148661314

GI number: 148661314

Start: 1711161

End: 1712120

Strand: Direct

Name: yibD [C]

Synonym: MRA_1530

Alternate gene names: 148661314

Gene position: 1711161-1712120 (Clockwise)

Preceding gene: 148661313

Following gene: 148661315

Centisome position: 38.71

GC content: 63.23

Gene sequence:

>960_bases
GTGGTGCCTGGTGATGCATCAAGCGTGGTATCGGTGAACCCGGCGAAACCGCTTATCTCGGTGTGCATCCCGATGTACAA
CAACGGCGCCACCATCGAGCGCTGTCTGCGTAGCATCCTCGAACAGGAGGGCGTCGAGTTCGAGATCGTGGTCGTTGACG
ACGACTCGTCCGACGACTGCGCCGCGATCGCCGCAACGATGCTGCGACCCGGAGACCGCTTGCTGCGAAATGAGCCTCGC
CTCGGCCTCAACCGAAACCACAACAAATGTCTGGAAGTCGCGCGCGGCGGACTTATTCAGTTCGTACATGGTGATGATCG
GCTGCTCCCCGGAGCCCTGCAGACACTCAGCCGACGTTTTGAGGATCCCAGTGTCGGAATGGCTTTCGCCCCCCGACGGG
TGGAGAGCGACGACATCAAGTGGCAACAACGGTACGGCAGGGTCCATACCCGTTTCCGCAAGCTGCGCGACCGCAACCAC
GGGCCGTCGCTGGTCTTGCAGATGGTATTGCACGGCGCGAAGGAAAATTGGATCGGCGAACCGACCGCCGTGATGTTTCG
GCGGCAATTGGCGCTGGACGCCGGTGGTTTTCGCACCGATATCTACCAGCTCGTCGATGTGGACTTCTGGCTTCGGTTGA
TGCTGAGGTCGGCGGTCTGCTTCGTTCCGCACGAGCTCTCGGTGCGCCGTCACACGGCGGCGACGGAGACCACACGGGTG
ATGGCGACTCGGCGCAACGTGCTGGACCGACAGCGCATTCTCACCTGGTTGATCGTGGACCCGTTGTCGCCCAACAGCGT
TCGCAGCGCCGCGGCGCTGTGGTGGATACCCGCATGGCTGGCCATGATCGTGGAGGTGGCCGTGCTCGGACCGCAGCGGC
GGACGCACTTGAAGGCTTTGGCGCCGGCCCCATTCCGCGAGTTCGCCCACGCCCGGCGTCAACTGCCGATGGCTGACTAG

Upstream 100 bases:

>100_bases
ATTGGGTACGGTCCAATCGTCGGCAGATCTCCCTCACCATCCTGATAGGGGTCGGGTTCCTCTTTTTGTACCAGGGCGTG
ACTAGTCTCTGAGTCGCCAT

Downstream 100 bases:

>100_bases
CAGTCGCACTCTGCCTGGCCGTCGTCGGAGCCACAGACAATTCCAACCCATTTGGCCTGGCGGCCAAGATGACATTTTTA
CAAGGTAAGGCTAGCCTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDCAAIAATMLRPGDRLLRNEPR
LGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRFEDPSVGMAFAPRRVESDDIKWQQRYGRVHTRFRKLRDRNH
GPSLVLQMVLHGAKENWIGEPTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKALAPAPFREFAHARRQLPMAD

Sequences:

>Translated_319_residues
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDCAAIAATMLRPGDRLLRNEPR
LGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRFEDPSVGMAFAPRRVESDDIKWQQRYGRVHTRFRKLRDRNH
GPSLVLQMVLHGAKENWIGEPTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKALAPAPFREFAHARRQLPMAD
>Mature_319_residues
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDCAAIAATMLRPGDRLLRNEPR
LGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRFEDPSVGMAFAPRRVESDDIKWQQRYGRVHTRFRKLRDRNH
GPSLVLQMVLHGAKENWIGEPTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKALAPAPFREFAHARRQLPMAD

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1518_MYCTU (Q50590)

Other databases:

- EMBL:   BX842576
- EMBL:   AE000516
- PIR:   A70715
- RefSeq:   NP_216034.1
- RefSeq:   NP_336021.1
- ProteinModelPortal:   Q50590
- EnsemblBacteria:   EBMYCT00000000627
- EnsemblBacteria:   EBMYCT00000070646
- GeneID:   886451
- GeneID:   924394
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT1568
- KEGG:   mtu:Rv1518
- TIGR:   MT1568
- TubercuList:   Rv1518
- GeneTree:   EBGT00050000016044
- HOGENOM:   HBG565156
- OMA:   KEYSCHD
- ProtClustDB:   CLSK791219
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: 2.-.-.- [C]

Molecular weight: Translated: 36089; Mature: 36089

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1d672268)-;

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDC
CCCCCCCCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHH
AAIAATMLRPGDRLLRNEPRLGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRF
HHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHC
EDPSVGMAFAPRRVESDDIKWQQRYGRVHTRFRKLRDRNHGPSLVLQMVLHGAKENWIGE
CCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
PTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKAL
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
APAPFREFAHARRQLPMAD
CCCCHHHHHHHHHCCCCCH
>Mature Secondary Structure
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDC
CCCCCCCCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHH
AAIAATMLRPGDRLLRNEPRLGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRF
HHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHC
EDPSVGMAFAPRRVESDDIKWQQRYGRVHTRFRKLRDRNHGPSLVLQMVLHGAKENWIGE
CCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
PTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKAL
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
APAPFREFAHARRQLPMAD
CCCCHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036