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The map label for this gene is ycdM [C]

Identifier: 148660732

GI number: 148660732

Start: 1065422

End: 1066270

Strand: Reverse

Name: ycdM [C]

Synonym: MRA_0960

Alternate gene names: 148660732

Gene position: 1066270-1065422 (Counterclockwise)

Preceding gene: 148660742

Following gene: 148660729

Centisome position: 24.12

GC content: 66.43

Gene sequence:

>849_bases
ATGCACTACGGACTTGTGCTGTTCACCAGCGACCGCGGCATCACCCCGGCCGCGGCCGCCAGACTTGCTGAAAGCCACGG
GTTTCGCACGTTTTACGTGCCCGAACACACCCACATCCCGGTCAAGCGCCAGGCGGCCCATCCGACGACGGGTGACGCTT
CGCTGCCGGACGACCGCTATATGCGCACGTTGGACCCGTGGGTGAGCCTGGGAGCAGCATCGGCGGTGACGTCGCGGATC
CGGCTTGCCACCGCGGTGGCGCTGCCGGTCGAGCATGATCCGATCACGCTGGCGAAAAGCATTGCGACGCTGGATCATTT
GTCGCACGGCCGGGTCAGCGTCGGGGTCGGGTTCGGCTGGAACACCGACGAGCTCGTCGATCATGGTGTGCCACCCGGAC
GCCGCCGCACCATGCTGCGCGAATACCTCGAGGCGATGCGGGCGTTGTGGACCCAAGAGGAGGCCTGCTATGACGGCGAG
TTCGTCAAGTTCGGACCTAGCTGGGCCTGGCCCAAGCCGGTGCAGCCGCACATCCCGGTGCTGGTAGGCGCTGCGGGGAC
GGAGAAGAACTTCAAGTGGATCGCGCGCAGCGCCGACGGCTGGATCACCACTCCACGCGACGTCGACATCGACGAGCCGG
TGAAGTTACTGCAAGACATCTGGGCGGCCGCCGGCCGCGACGGGCTTCCACAGATCGTGGCCCTGGACGTCAAACCGGTG
CCCGACAAGCTGGCGCGCTGGGCCGAGCTTGGCGTTACGGAGGTGCTGTTCGGTATGCCGGACAGGTCTGCAGACGACGC
AGCCGCGTACGTGGAGCGGCTGGCCGCCAAGTTGGCCTGTTGCGTATAG

Upstream 100 bases:

>100_bases
CGCACGTTCGGGTGCCGCTGCCGGAGCGACCGGCGCTCGCGACATTAACGACTGGACGGCCGCTTGCCCGGCGCAGGTGG
AACACGTTCTAATTCGGTGC

Downstream 100 bases:

>100_bases
GGCGAGCAGACGCATAAGCCCCCGACACGCCGAGCGTGCGGGGGCTTATGCGTCTGCTCGCCCTAGAGACTGAGCAAGAT
CTCCCGGGCCAGCGCCGCGG

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGDASLPDDRYMRTLDPWVSLGAASAVTSRI
RLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGE
FVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV

Sequences:

>Translated_282_residues
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGDASLPDDRYMRTLDPWVSLGAASAVTSRI
RLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGE
FVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
>Mature_282_residues
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGDASLPDDRYMRTLDPWVSLGAASAVTSRI
RLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGE
FVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c

Homologues:

Organism=Escherichia coli, GI1787247, Length=144, Percent_Identity=32.6388888888889, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y953_MYCTU (P64769)

Other databases:

- EMBL:   BX842575
- EMBL:   AE000516
- PIR:   G70716
- RefSeq:   NP_215468.1
- RefSeq:   NP_335414.1
- ProteinModelPortal:   P64769
- EnsemblBacteria:   EBMYCT00000003034
- EnsemblBacteria:   EBMYCT00000070878
- GeneID:   885419
- GeneID:   926372
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT0980
- KEGG:   mtu:Rv0953c
- TIGR:   MT0980
- TubercuList:   Rv0953c
- GeneTree:   EBGT00050000014763
- HOGENOM:   HBG668369
- OMA:   LQDTWAA
- ProtClustDB:   CLSK790851
- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048
- Gene3D:   G3DSA:3.20.20.30
- TIGRFAMs:   TIGR03619

Pfam domain/function: PF00296 Bac_luciferase; SSF51679 Luciferase_like

EC number: NA

Molecular weight: Translated: 30914; Mature: 30914

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGDASLPDDRY
CCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
MRTLDPWVSLGAASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGW
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
NTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGEFVKFGPSWAWPKPVQPHIPV
CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCE
LVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
EEECCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
HHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTTGDASLPDDRY
CCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
MRTLDPWVSLGAASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGW
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
NTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGEFVKFGPSWAWPKPVQPHIPV
CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCE
LVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
EEECCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
HHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036