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The map label for this gene is yjfH [C]

Identifier: 148660658

GI number: 148660658

Start: 980669

End: 981535

Strand: Direct

Name: yjfH [C]

Synonym: MRA_0888

Alternate gene names: 148660658

Gene position: 980669-981535 (Clockwise)

Preceding gene: 148660657

Following gene: 148660659

Centisome position: 22.19

GC content: 66.32

Gene sequence:

>867_bases
GTGACCGAAGGCCGTTGTGCCCAGCACCCCGACGGCCTCGATGTTCAGGACGTCTGCGATCCCGACGACCCACGGCTCGA
CGATTTCCGTGACCTGAACAGCATCGACCGTCGTCCCGATCTGCCGACCGGCAAGGCGTTGGTGATCGCCGAGGGTGTGC
TGGTGGTGCAGCGCATGCTGGCCTCACGGTTCACGCCGCTGGCGCTGTTCGGCACCGACCGCCGGCTGGCCGAGCTCAAG
GATGATCTGGCCGGTGTCGGCGCGCCGTACTATCGAGCGTCGGCTGATGTCATGGCACGGGTGATCGGCTTCCATCTCAA
TCGTGGGGTGTTGGCAGCCGCGGGCCGGGTGCCGGAGCCGAGCGTTGCTCAGGTGGTCGCCGGGGCGCGCACCGTCGCAG
TGTTGGAAGGCGTTAACGACCATGAGAACCTGGGCTCGATCTTCCGCAACGCGGCAGGGCTGAGCGTGGACGCGGTAGTG
TTCGGCACCGGCTGCGCTGATCCGCTCTACCGTCGTGCGGTCCGGGTATCCATGGGACACGCGTTATTGGTGCCATATGC
ACGCGCGGCCGACTGGCCCACCGAACTTATGACGTTGAAAGAGAGCGGCTTTCGACTGTTGGCGATGACCCCACACGGCA
ACGCGTGCAAACTACCGGAGGCCATCGCCGCGGTGTCGCACGAACGGATTGCGCTACTGGTGGGCGCGGAGGGCCCGGGC
CTAACGGCGGCCGCACTGCGGATTAGCGATGTGCGGGTGCGCATTCCGATGTCCCGAGGGACCGACTCCCTCAACGTCGC
GACGGCGGCCGCATTGGCTTTCTACGAGCGGACTAGGTCGGGCCATCACATTGGGCCCGGCACGTGA

Upstream 100 bases:

>100_bases
AGGAGTGGCTGGCTGAGCGGCTCGCGACGCTGAACCGCAGCGAGCGTGACATCCTGCGCAGCGCCGCCGATCTGATGCTG
GCTCTGGTCGACGAAAGCCC

Downstream 100 bases:

>100_bases
ACGATCAGCGCGACCAAGCCGTGCCCTGGGCAACGGGTTTGGCGGTCGCCGGCTTCGTCGCCGCAGTCATCGCGGTTGCG
GTCGTGGTGCTGAGCCTCGG

Product: putative rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELK
DDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVV
FGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG
LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT

Sequences:

>Translated_288_residues
MTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELK
DDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVV
FGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG
LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT
>Mature_287_residues
TEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKD
DLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVF
GTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGL
TAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y881_MYCTU (Q10543)

Other databases:

- EMBL:   BX842574
- EMBL:   AE000516
- PIR:   F70780
- RefSeq:   NP_215396.1
- RefSeq:   NP_335332.1
- ProteinModelPortal:   Q10543
- EnsemblBacteria:   EBMYCT00000002854
- EnsemblBacteria:   EBMYCT00000071287
- GeneID:   885121
- GeneID:   926214
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT0904
- KEGG:   mtu:Rv0881
- TIGR:   MT0904
- TubercuList:   Rv0881
- GeneTree:   EBGT00050000015604
- HOGENOM:   HBG714057
- OMA:   DIVDHTN
- ProtClustDB:   CLSK790805
- InterPro:   IPR001537

Pfam domain/function: PF00588 SpoU_methylase

EC number: 2.1.1.- [C]

Molecular weight: Translated: 30602; Mature: 30471

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML
CCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHH
ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP
HHCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH
HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCC
ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG
EEEECCHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCEEEEEEECCCCC
LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT
CEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML
CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHH
ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP
HHCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH
HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCC
ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG
EEEECCHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCEEEEEEECCCCC
LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT
CEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036