Click here to switch to the map view.

The map label for this gene is mmpS1

Identifier: 148660168

GI number: 148660168

Start: 484538

End: 484966

Strand: Reverse

Name: mmpS1

Synonym: MRA_0409

Alternate gene names: 148660168

Gene position: 484966-484538 (Counterclockwise)

Preceding gene: 148660171

Following gene: 148660167

Centisome position: 10.97

GC content: 60.61

Gene sequence:

>429_bases
ATGTTCGGCGTTGCCAAACGCTTCTGGATCCCGATGGTGATAGTCATCGTTGTGGCTGTCGCGGCCGTGACGGTCTCGCG
GCTGCACTCGGTGTTTGGCTCACATCAACATGCGCCCGACACCGGCAACCTCGACCCGATCATCGCGTTTTACCCGAAGC
ATGTTCTCTACGAGGTCTTCGGCCCGCCAGGGACGGTCGCCAGCATCAATTACCTGGATGCCGATGCCCAGCCGCATGAG
GTCGTCAATGCCGCGGTCCCGTGGTCATTTACCATCGTGACCACCTTGACCGCCGTAGTCGCCAACGTGGTTGCCCGCGG
TGACGGTGCAAGCCTGGGCTGTCGCATCACTGTCAACGAGGTGATCCGCGAGGAGCGCATTGTGAATGCTTACCACGCGC
ACACCAGTTGCCTGGTGAAATCCGCGTGA

Upstream 100 bases:

>100_bases
TGTAAACGGAGTGTACAAAACTGCCCCAACGAGTGGCGTCTCCCCGGTAGGGTTCGTCCTCACGCGGCGGCTTGTTGAAG
CGATGGAATCAGGAAGGTAA

Downstream 100 bases:

>100_bases
GGAGCCAACGTCTAGCCGGGCACCTGTCGGCCGCCGCCCGGACGATCCATGCGTTGTCGCTACCCATCATTCTGTTCTGG
GTGGCGCTGACTATTGTGGT

Product: putative membrane protein MmpS1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPHE
VVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLVKSA

Sequences:

>Translated_142_residues
MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPHE
VVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLVKSA
>Mature_142_residues
MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVFGPPGTVASINYLDADAQPHE
VVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREERIVNAYHAHTSCLVKSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mmpS family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MMPS1_MYCBO (P0A5K1)

Other databases:

- EMBL:   BX248335
- RefSeq:   NP_854073.1
- EnsemblBacteria:   EBMYCT00000017190
- GeneID:   1091382
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb0410c
- GeneTree:   EBGT00050000015314
- HOGENOM:   HBG566824
- OMA:   PHEVANA
- ProtClustDB:   CLSK2299980
- BioCyc:   MBOV233413:MB0410C-MONOMER
- InterPro:   IPR008693

Pfam domain/function: PF05423 Mycobact_memb

EC number: NA

Molecular weight: Translated: 15261; Mature: 15261

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1c513684)-; HASH(0x1b2f8fa8)-;

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHC
GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE
CCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
VIREERIVNAYHAHTSCLVKSA
HHHHHHHHHHHHHHHHHEEECH
>Mature Secondary Structure
MFGVAKRFWIPMVIVIVVAVAAVTVSRLHSVFGSHQHAPDTGNLDPIIAFYPKHVLYEVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHC
GPPGTVASINYLDADAQPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNE
CCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
VIREERIVNAYHAHTSCLVKSA
HHHHHHHHHHHHHHHHHEEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972