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The map label for this gene is ymdB [C]

Identifier: 148654144

GI number: 148654144

Start: 2922973

End: 2923557

Strand: Direct

Name: ymdB [C]

Synonym: PsycPRwf_2347

Alternate gene names: 148654144

Gene position: 2922973-2923557 (Clockwise)

Preceding gene: 148654139

Following gene: 148654146

Centisome position: 98.12

GC content: 48.38

Gene sequence:

>585_bases
ATGAATGCCCCCGCTATCTTATTTCAAAAACAAGTTTATACCAAAGATGATCACAATCATGAGCACCCAGTGACCCTAAC
CCTTATTCAAGCAGATATTACGACATTGAAAGTCGATGCCATTGTCAATGCTGCCAATTCAAGCTTGCTCGGTGGTGGCG
GGGTTGATGGCGCCATTCACCGCGCTGCAGGGCCTGAGCTTGTCGCCTATTGCCGTACCTTGAATGGCTGCGCAACTGGG
GAGGCCAAAATCAGCCCAGGCTTTAAGCTACCGGCCCAGTATGTCATTTATACCGTAGGCCCTGTTTGGCATGGCGGTAA
TCAAGGTGAGCCTGAGCTGCTTGCCAGCTGCTATCGTAATAGCTTAGCGCTTGCACAGCAGCATGATATCAAAAGTATTG
CTTTTCCGGCCATTAGTACCGGTGTCTATGGCTACCCTATCGAGCAGGCCACAGACATTGCCATTAATAGCGTGATAGAC
AGTATCCAGCAAGCTTCGGTATCACAGCTTGTGATTACAGAGGTGATTTATTGCTGTTTTTCAGCAGCCGATGCCGCTGT
CTATAAGCAGCAACTGAATTTATAA

Upstream 100 bases:

>100_bases
ACAAAATAGGCTCAACCTAGAAAATTAATAGACCGCTTATCAATTATCATTAATCAGATAAAAACGCTTTTCTTCACTAT
CTTTAATGTAGGAGTTAACT

Downstream 100 bases:

>100_bases
GCACAAGCAGTCTTACGTCTTAAAGCTGGGCTTACGGCCAAATCTTGCCTGGGTTTAAGATATTATTCGGGTCAAGTGCG
TGCTTAATGGCTTGCATCAT

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MNAPAILFQKQVYTKDDHNHEHPVTLTLIQADITTLKVDAIVNAANSSLLGGGGVDGAIHRAAGPELVAYCRTLNGCATG
EAKISPGFKLPAQYVIYTVGPVWHGGNQGEPELLASCYRNSLALAQQHDIKSIAFPAISTGVYGYPIEQATDIAINSVID
SIQQASVSQLVITEVIYCCFSAADAAVYKQQLNL

Sequences:

>Translated_194_residues
MNAPAILFQKQVYTKDDHNHEHPVTLTLIQADITTLKVDAIVNAANSSLLGGGGVDGAIHRAAGPELVAYCRTLNGCATG
EAKISPGFKLPAQYVIYTVGPVWHGGNQGEPELLASCYRNSLALAQQHDIKSIAFPAISTGVYGYPIEQATDIAINSVID
SIQQASVSQLVITEVIYCCFSAADAAVYKQQLNL
>Mature_194_residues
MNAPAILFQKQVYTKDDHNHEHPVTLTLIQADITTLKVDAIVNAANSSLLGGGGVDGAIHRAAGPELVAYCRTLNGCATG
EAKISPGFKLPAQYVIYTVGPVWHGGNQGEPELLASCYRNSLALAQQHDIKSIAFPAISTGVYGYPIEQATDIAINSVID
SIQQASVSQLVITEVIYCCFSAADAAVYKQQLNL

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=169, Percent_Identity=52.6627218934911, Blast_Score=184, Evalue=5e-47,
Organism=Homo sapiens, GI13569840, Length=189, Percent_Identity=47.6190476190476, Blast_Score=177, Evalue=6e-45,
Organism=Homo sapiens, GI207450721, Length=134, Percent_Identity=41.044776119403, Blast_Score=105, Evalue=2e-23,
Organism=Homo sapiens, GI8923143, Length=134, Percent_Identity=41.044776119403, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI154813199, Length=147, Percent_Identity=38.0952380952381, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI20336746, Length=174, Percent_Identity=34.4827586206897, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI93141018, Length=177, Percent_Identity=32.7683615819209, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI93141020, Length=177, Percent_Identity=32.7683615819209, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI4758496, Length=177, Percent_Identity=32.7683615819209, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI226371718, Length=148, Percent_Identity=30.4054054054054, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI226371710, Length=148, Percent_Identity=30.4054054054054, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI226371706, Length=148, Percent_Identity=30.4054054054054, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI226371716, Length=148, Percent_Identity=30.4054054054054, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI226371714, Length=148, Percent_Identity=30.4054054054054, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI226371712, Length=148, Percent_Identity=30.4054054054054, Blast_Score=74, Evalue=8e-14,
Organism=Escherichia coli, GI1787283, Length=170, Percent_Identity=49.4117647058824, Blast_Score=155, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17538214, Length=150, Percent_Identity=46.6666666666667, Blast_Score=124, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24586353, Length=166, Percent_Identity=28.3132530120482, Blast_Score=80, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20615; Mature: 20615

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPAILFQKQVYTKDDHNHEHPVTLTLIQADITTLKVDAIVNAANSSLLGGGGVDGAIH
CCCCCEEEEHHHCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHCCCCCCCCCCCCCHHH
RAAGPELVAYCRTLNGCATGEAKISPGFKLPAQYVIYTVGPVWHGGNQGEPELLASCYRN
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCHHHHHHHHHH
SLALAQQHDIKSIAFPAISTGVYGYPIEQATDIAINSVIDSIQQASVSQLVITEVIYCCF
HHHHHHHCCCHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAADAAVYKQQLNL
HHHHHHHHHHHCCC
>Mature Secondary Structure
MNAPAILFQKQVYTKDDHNHEHPVTLTLIQADITTLKVDAIVNAANSSLLGGGGVDGAIH
CCCCCEEEEHHHCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHCCCCCCCCCCCCCHHH
RAAGPELVAYCRTLNGCATGEAKISPGFKLPAQYVIYTVGPVWHGGNQGEPELLASCYRN
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCHHHHHHHHHH
SLALAQQHDIKSIAFPAISTGVYGYPIEQATDIAINSVIDSIQQASVSQLVITEVIYCCF
HHHHHHHCCCHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAADAAVYKQQLNL
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]