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The map label for this gene is sodC2 [H]

Identifier: 148653777

GI number: 148653777

Start: 2468004

End: 2468555

Strand: Direct

Name: sodC2 [H]

Synonym: PsycPRwf_1980

Alternate gene names: 148653777

Gene position: 2468004-2468555 (Clockwise)

Preceding gene: 148653776

Following gene: 148653778

Centisome position: 82.85

GC content: 48.91

Gene sequence:

>552_bases
ATGAAAACCTTATTCACAGCCTCTACCCTTTTAGCCTCAGCTTTAGCATTAAGTGCGTGTCAGAGCACCCCTACTAAACA
AAGCGTGCCTGATGAAGCCCAACCGGTTTTAAAATCACAAATTATGACCACAGATGGCAGCAATAAGCACATAGGTGATA
TGTTCTTACGTCCTGTGGCCGGCGGCGTTCAAGTCTTTGGTAAGCTACAAGGCTTGACACCAGGCGCCACCGTTGCGATG
CACATTCATGAGACGGGCAGCTGTGCCGATATGGGTAAAGCGGCCGGTGGTCATTTTAATCCTTACCATAAGTTGCATGG
CAACCCTATGGGTGCAGAGAACCATGCAGGCGACCTACCCAACTTGACTGCTGATGCCAATGGTGTGGCCTCCATGAATT
TTGTCAAAAAAGACATCTCTGTAGCGATGCAAGGCGATAACAGTGTCTATCGTCGTGCCTTTATCGTTCATGGCGGTGTA
GATGATTATGTCAGCCAGCCTGCGGGTAATGCCGGTGCTCGTATCGCTTGTGGCATTATTGAGAAGTACTAG

Upstream 100 bases:

>100_bases
ATAATTGTTTCTGTAGAGATAAAGTTATACTCAGTATGGTCACTCATTTATTCTAAGACAGGGATGTCTGACTTTTCACC
ACAATTTTTGGAGTTTAATA

Downstream 100 bases:

>100_bases
GTTGGCTCGCTTTTAACAGCATATAGTTAATAGTCGATAGTTGATTAAAAAACCAGCGGTGTTTAATACAAATCTAATTT
GTGTTGACGCCGCTGGTTTT

Product: superoxide dismutase, copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKTLFTASTLLASALALSACQSTPTKQSVPDEAQPVLKSQIMTTDGSNKHIGDMFLRPVAGGVQVFGKLQGLTPGATVAM
HIHETGSCADMGKAAGGHFNPYHKLHGNPMGAENHAGDLPNLTADANGVASMNFVKKDISVAMQGDNSVYRRAFIVHGGV
DDYVSQPAGNAGARIACGIIEKY

Sequences:

>Translated_183_residues
MKTLFTASTLLASALALSACQSTPTKQSVPDEAQPVLKSQIMTTDGSNKHIGDMFLRPVAGGVQVFGKLQGLTPGATVAM
HIHETGSCADMGKAAGGHFNPYHKLHGNPMGAENHAGDLPNLTADANGVASMNFVKKDISVAMQGDNSVYRRAFIVHGGV
DDYVSQPAGNAGARIACGIIEKY
>Mature_183_residues
MKTLFTASTLLASALALSACQSTPTKQSVPDEAQPVLKSQIMTTDGSNKHIGDMFLRPVAGGVQVFGKLQGLTPGATVAM
HIHETGSCADMGKAAGGHFNPYHKLHGNPMGAENHAGDLPNLTADANGVASMNFVKKDISVAMQGDNSVYRRAFIVHGGV
DDYVSQPAGNAGARIACGIIEKY

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=146, Percent_Identity=36.986301369863, Blast_Score=92, Evalue=2e-19,
Organism=Homo sapiens, GI4826665, Length=134, Percent_Identity=33.5820895522388, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI1787934, Length=152, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71981876, Length=125, Percent_Identity=40.8, Blast_Score=88, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71981879, Length=125, Percent_Identity=40.8, Blast_Score=88, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17537871, Length=121, Percent_Identity=40.495867768595, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17554806, Length=124, Percent_Identity=33.8709677419355, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322564, Length=119, Percent_Identity=40.3361344537815, Blast_Score=84, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17136496, Length=137, Percent_Identity=35.7664233576642, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281363087, Length=119, Percent_Identity=37.8151260504202, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24652342, Length=119, Percent_Identity=37.8151260504202, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI85725006, Length=184, Percent_Identity=30.4347826086957, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007680, Length=177, Percent_Identity=29.3785310734463, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45551081, Length=177, Percent_Identity=29.3785310734463, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24652737, Length=177, Percent_Identity=29.3785310734463, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 19052; Mature: 19052

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLFTASTLLASALALSACQSTPTKQSVPDEAQPVLKSQIMTTDGSNKHIGDMFLRPVA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
GGVQVFGKLQGLTPGATVAMHIHETGSCADMGKAAGGHFNPYHKLHGNPMGAENHAGDLP
HHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCC
NLTADANGVASMNFVKKDISVAMQGDNSVYRRAFIVHGGVDDYVSQPAGNAGARIACGII
CCCCCCCCCHHHHHHHHHHEEEECCCCCEEEEEEEEECCHHHHHHCCCCCCCCEEEEEEE
EKY
CCC
>Mature Secondary Structure
MKTLFTASTLLASALALSACQSTPTKQSVPDEAQPVLKSQIMTTDGSNKHIGDMFLRPVA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
GGVQVFGKLQGLTPGATVAMHIHETGSCADMGKAAGGHFNPYHKLHGNPMGAENHAGDLP
HHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCC
NLTADANGVASMNFVKKDISVAMQGDNSVYRRAFIVHGGVDDYVSQPAGNAGARIACGII
CCCCCCCCCHHHHHHHHHHEEEECCCCCEEEEEEEEECCHHHHHHCCCCCCCCEEEEEEE
EKY
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]