| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is engD [H]
Identifier: 148653706
GI number: 148653706
Start: 2371635
End: 2372726
Strand: Direct
Name: engD [H]
Synonym: PsycPRwf_1909
Alternate gene names: 148653706
Gene position: 2371635-2372726 (Clockwise)
Preceding gene: 148653705
Following gene: 148653707
Centisome position: 79.61
GC content: 46.89
Gene sequence:
>1092_bases ATGGGCTTTAATTGTGGCATCGTGGGCTTACCAAACGTTGGAAAATCAACTTTATTTAATGCGTTAACCAAAGCGGGTAT TGCCGCAGAAAACTTTCCATTTTGTACCAAAGATCCTAACGTCGGTATCGTACCTGTACCTGATCCACGTCTAAACAAAC TGGCCGAAATTGTAAAGCCTGAGCGTGTATTGCCGACCACTATGGAATTTGTGGATATTGCTGGTCTGGTAGCTGGCGCA TCACAAGGTGAAGGGATGGGTAACCAGTTCTTAGCCAATATCCGTGAGACCGATGCGATCGCTCACGTGGTACGCTGCTT CGATGATGACAACGTCATCCACGTAGATGGCCGTGTCAGCCCTATTGATGATATCGAAACCATCAATACTGAGCTGGCTT TGGCTGACTTAGAAGCCGTTGAGCGTGCTATTGTGAACTTGACTAAAAAGGCTAAGGGCAATGACAAAGATGCTCAAGCC ACCCTTGATGTGTTCAAAAAAATCGAACCTTTATTGGCCGAAGGCAAAGCTGCGCGCGGTGCCAACTTAGATCAAGATGA GAAAAAGCTGATTAAAAGCTATGGCCTAATCACTTTAAAGCCCACCATGTATATTGCCAACGTCAGTGAAGATGGATTTG AGAACAATCCTTATCTTGACGCTGTTCGTGACTATGCTGCCAAAGAAGAGGCAATCGTATTGCCTTTATGCAACCAAATT GAAGCAGAAATCTCTCAATTAGATGAGGCAGATAAAGCCGACTTCTTAGAGGGCATGGGCATGGAAGAGGCAGGTCTTGA CCAAGTCATTCGCTTGGGCTACAAACTGCTCGATATGCAAACTTACTTCACCGCTGGTGTTAAAGAAGTACGTGCCTGGA CTGTCAAAGTGGGCGCCACGGCACCTGAAGCGGCTGGGGTTATCCACACTGACTTTGAGCGCGGCTTCATTCGTGCCGAA GTGATTGCTTATGAAGACTTCATTGAGCATGGCGGCGAAAAAGGCGCAGCTGCTGCCGGTAAATCTCGCTTAGAGGGCAA GACCTATATCGTCCAAGATGGCGATGTGATGCACTTTAGATTTAACGTGTAG
Upstream 100 bases:
>100_bases AACCTCATATCCAAGGGTCGTTTTTATTGATTGTTATTGATGAGCGATCTTCCACTTTATTTTATTACCTTAAATCACAT CAAATTAAGAGAGACAAATC
Downstream 100 bases:
>100_bases CTTTAGCTTTACGCTGATAAAAAGTAAATAGCAGCTCACGTTACTTAGGGTAAAAGACTCTTTATTTTGCCCTAATGCTG AGACCTAAAAAAGCCGACCT
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MGFNCGIVGLPNVGKSTLFNALTKAGIAAENFPFCTKDPNVGIVPVPDPRLNKLAEIVKPERVLPTTMEFVDIAGLVAGA SQGEGMGNQFLANIRETDAIAHVVRCFDDDNVIHVDGRVSPIDDIETINTELALADLEAVERAIVNLTKKAKGNDKDAQA TLDVFKKIEPLLAEGKAARGANLDQDEKKLIKSYGLITLKPTMYIANVSEDGFENNPYLDAVRDYAAKEEAIVLPLCNQI EAEISQLDEADKADFLEGMGMEEAGLDQVIRLGYKLLDMQTYFTAGVKEVRAWTVKVGATAPEAAGVIHTDFERGFIRAE VIAYEDFIEHGGEKGAAAAGKSRLEGKTYIVQDGDVMHFRFNV
Sequences:
>Translated_363_residues MGFNCGIVGLPNVGKSTLFNALTKAGIAAENFPFCTKDPNVGIVPVPDPRLNKLAEIVKPERVLPTTMEFVDIAGLVAGA SQGEGMGNQFLANIRETDAIAHVVRCFDDDNVIHVDGRVSPIDDIETINTELALADLEAVERAIVNLTKKAKGNDKDAQA TLDVFKKIEPLLAEGKAARGANLDQDEKKLIKSYGLITLKPTMYIANVSEDGFENNPYLDAVRDYAAKEEAIVLPLCNQI EAEISQLDEADKADFLEGMGMEEAGLDQVIRLGYKLLDMQTYFTAGVKEVRAWTVKVGATAPEAAGVIHTDFERGFIRAE VIAYEDFIEHGGEKGAAAAGKSRLEGKTYIVQDGDVMHFRFNV >Mature_362_residues GFNCGIVGLPNVGKSTLFNALTKAGIAAENFPFCTKDPNVGIVPVPDPRLNKLAEIVKPERVLPTTMEFVDIAGLVAGAS QGEGMGNQFLANIRETDAIAHVVRCFDDDNVIHVDGRVSPIDDIETINTELALADLEAVERAIVNLTKKAKGNDKDAQAT LDVFKKIEPLLAEGKAARGANLDQDEKKLIKSYGLITLKPTMYIANVSEDGFENNPYLDAVRDYAAKEEAIVLPLCNQIE AEISQLDEADKADFLEGMGMEEAGLDQVIRLGYKLLDMQTYFTAGVKEVRAWTVKVGATAPEAAGVIHTDFERGFIRAEV IAYEDFIEHGGEKGAAAAGKSRLEGKTYIVQDGDVMHFRFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=365, Percent_Identity=43.5616438356164, Blast_Score=310, Evalue=1e-84, Organism=Homo sapiens, GI58761502, Length=218, Percent_Identity=36.697247706422, Blast_Score=159, Evalue=3e-39, Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=68.3195592286501, Blast_Score=524, Evalue=1e-150, Organism=Caenorhabditis elegans, GI17509631, Length=362, Percent_Identity=41.9889502762431, Blast_Score=299, Evalue=2e-81, Organism=Saccharomyces cerevisiae, GI6319499, Length=369, Percent_Identity=39.2953929539295, Blast_Score=256, Evalue=4e-69, Organism=Saccharomyces cerevisiae, GI6321773, Length=382, Percent_Identity=33.2460732984293, Blast_Score=196, Evalue=5e-51, Organism=Saccharomyces cerevisiae, GI6321649, Length=145, Percent_Identity=37.9310344827586, Blast_Score=81, Evalue=3e-16, Organism=Drosophila melanogaster, GI24640873, Length=363, Percent_Identity=42.6997245179063, Blast_Score=297, Evalue=7e-81, Organism=Drosophila melanogaster, GI24640877, Length=363, Percent_Identity=42.6997245179063, Blast_Score=297, Evalue=7e-81, Organism=Drosophila melanogaster, GI24640875, Length=363, Percent_Identity=42.6997245179063, Blast_Score=297, Evalue=7e-81, Organism=Drosophila melanogaster, GI24640879, Length=325, Percent_Identity=40, Blast_Score=244, Evalue=5e-65, Organism=Drosophila melanogaster, GI24585318, Length=174, Percent_Identity=28.1609195402299, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 39406; Mature: 39275
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFNCGIVGLPNVGKSTLFNALTKAGIAAENFPFCTKDPNVGIVPVPDPRLNKLAEIVKP CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCC ERVLPTTMEFVDIAGLVAGASQGEGMGNQFLANIRETDAIAHVVRCFDDDNVIHVDGRVS CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC PIDDIETINTELALADLEAVERAIVNLTKKAKGNDKDAQATLDVFKKIEPLLAEGKAARG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC ANLDQDEKKLIKSYGLITLKPTMYIANVSEDGFENNPYLDAVRDYAAKEEAIVLPLCNQI CCCCHHHHHHHHHCCCEEEECEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECHHHH EAEISQLDEADKADFLEGMGMEEAGLDQVIRLGYKLLDMQTYFTAGVKEVRAWTVKVGAT HHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCC APEAAGVIHTDFERGFIRAEVIAYEDFIEHGGEKGAAAAGKSRLEGKTYIVQDGDVMHFR CCCCCCCEEECHHCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHCCCCEEEEECCCEEEEE FNV ECC >Mature Secondary Structure GFNCGIVGLPNVGKSTLFNALTKAGIAAENFPFCTKDPNVGIVPVPDPRLNKLAEIVKP CCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCC ERVLPTTMEFVDIAGLVAGASQGEGMGNQFLANIRETDAIAHVVRCFDDDNVIHVDGRVS CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC PIDDIETINTELALADLEAVERAIVNLTKKAKGNDKDAQATLDVFKKIEPLLAEGKAARG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC ANLDQDEKKLIKSYGLITLKPTMYIANVSEDGFENNPYLDAVRDYAAKEEAIVLPLCNQI CCCCHHHHHHHHHCCCEEEECEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECHHHH EAEISQLDEADKADFLEGMGMEEAGLDQVIRLGYKLLDMQTYFTAGVKEVRAWTVKVGAT HHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCC APEAAGVIHTDFERGFIRAEVIAYEDFIEHGGEKGAAAAGKSRLEGKTYIVQDGDVMHFR CCCCCCCEEECHHCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHCCCCEEEEECCCEEEEE FNV ECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA