| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is gcd [H]
Identifier: 148653572
GI number: 148653572
Start: 2198942
End: 2201506
Strand: Direct
Name: gcd [H]
Synonym: PsycPRwf_1775
Alternate gene names: 148653572
Gene position: 2198942-2201506 (Clockwise)
Preceding gene: 148653571
Following gene: 148653573
Centisome position: 73.82
GC content: 49.08
Gene sequence:
>2565_bases ATGCAAAAATTTCTGGCTATTTTGATGGCATTGTTTGCGCTGCCCTTGCTTATTGGCGGCGGCTACTTGCTATTCTTAGG AGGCAGCCCCTATTATGTGATCGCGGGCATAATGATGCTACTGACCGCATGGCTACTGCTAAAAAGACATTGGGGGGCTT ATGCCCTCTATAGCCTGTTTATCATTGGCTCAGTTATCTGGGCAGTATGGGAAGCAGGCTTTTATTGGTGGGCGTTGGCC ACGCGCCTAGGCTTCCCACTTATCTTCGGTCTACTCATGCTGCTGCCTTGGGTCGCTAAGAAGATGGGAAATCATAAATC CAAAATCTTGACTGCGCCTGCCGGCAACACCCTGCATACCACCTCAAGCACAGGTGCCGCTCAAGTACAGCCGCCTGTAT CCCAGCCACTGACTTCTGCGCCAGCCGATACCCACAATACGGGTAACCCACTTTATTATTGGGGCTTATTGGCATCAGTA GTGGCCGGTGCTGCGGTATCTTTTGGTAGTATGGCCAACAATCCCACTGACAAATTGGGCCGCTTAGATCTAAATACCAG TACGTCAGATACTACAGCCAACTTAGGGGACGCCTTATCGAACGGTCAACAGACCCCTGAAGGAGATTGGAGTGCTTATG GCCGTACCGATTATGGTCAGCGCTATTCACCCCTGAGTCAAATTAATACCGAAAACGTCAAAAATCTAGAAGTGGCTTGG CAGATCCAAACCGGTGATGTCAAAGGCCCTAAAGATATCGGTGAAACCACATATCAAGCCACACCACTGAAGATTGGCAA TGCGCTATATCTATGTACCCCTCACAACTGGGTAATGGCACTAGATGCGGATACGGGTGAGAGCCTATGGACCTTTGATC CTAAGGTGGGTGAAAACCAAAAGCGCCAGCACCAAACGTGTCGCGGCGTCTCTTTTTATGCCGGCTCACAATCGCCAGTG AATGCCATTCAAGCTTCAGCCGCCACCTCGGCTAACAATACGACACTTACAGCGCAAAAAATCGAGGGCAATACCTTTAA TAATGCGCCTGTGCAGTGTGATGCTCGCATCTTTATTCCTACCTCAGATGCTAAGCTTTATGCACTAAATCCTGAGACCG GACAACGCTGTGCAGACTTTGGCGATAACGGCGCGCTTGATTTAATGCACAATATGCCATTTAAACAAGCCGGTTTTTAT TACTCAACGTCACCACCTGTTGTGGCCGGTAACCTAGTTATCGTAGCCGGTGCAGTCAATGACAACTATGATATTAACTC ACCCTCTGGTGTTATCCGTGCTTATGATGTGCGTACAGGTGAGCTTAAGTGGAACTGGGACTCTGGTAACCCACAACAAA CTGCGCCGCTGGATGTCAACGATCCCAATCAAGTGTACAAGACCAGTTCACCCAACTCTTGGTCTATTGCCACAGCTGAT GAAAAGTTAGGCTTGGCTTATTTCCCAATGGGTAACCGTACCCCTGATCAGTTAGGTGTTTATCGCACCCCTGAAGAAGA AAAGTATGCCACCTCTGTGGTTGCCTTAGATCTAAAAACCGGACAAGCACGCTGGGTACAGCAGTTCGTACACCATGACT TGTGGGATATGGACACCCCTGCTCAGCCGACATTATTGGACTTAAAAACCGATAAAGGCGTGCAGCCTGCGCTTGTGGTT CCGACTAAGCAAGGTGATGTTTATGTGTTAAACCGTGCTACGGGTGAGCCTATCTTACCGATTAAAGAGCGCCCTGCACC GCAAGGTGACTTGATAGCAGGGGAACATGCTGCGCCCACTCAGCCTTACTCAGCACTAAGCTTTGAGCCAAAACGCTTAA CTGAAAAAGACATGTGGGGGGCAAGCTTAATCGACCAAATGATGTGTCGTATTGAGTTTAATAAGCTGAACTATGAGGGC CGCTACACACCACCTTCGCTCAATGGGACGTTGGTATATCCAGGTAACTTTGGTACCTTTAACTGGGGCAGCTTGGCGGT TGATCCAGAAAATGGTGTTATGTTTGGTATGCCCACTTATTTGGCCTTCACCTCCAAGCTTATTCCTAAACACAGCTTAG GTGACGTGGAGACCAACAAAGGTGAGCAAGGGGTTAACGCCAACGAAGGCGCCGATTATGCCGTAGAGATGGGGCCTTTC TTATCGCCACTTGGCGTGCCTTGTCAGCAGCCACCTTGGGGCACGATTGCTGCCGCCAACTTAAGCACAGGCGACATCGC TTATCAGCGCAAAAACGGTACCGTACAAGACCTATCGCCTTTACCACTAAAGTTTGAGCTGGGTGTGCCGGGTATTGGTG GTCCTATCATCACTAAAGGCGGCGTGGCCTTCTTATCAGCTGCAACTGAAAACAACTTCAGAGCTTATGACTTAGCAACC GGTGATGTGCTTTGGAACCAGCGTATACCGGCAGGTGGCCAAGCCACACCTATGACTTACTTAAACTCAAAAAGTGAACA GATGGTGGTATTGGTAGCCGGTGGTCACGGCTCAGTCGGAACCAAAATTGGTGATTATGTGATTGCATATAAACTGGCCA AATAA
Upstream 100 bases:
>100_bases GCTTTATAAGCAATTTAAGCCTTCAAGGACAGAAGGATCACTTAGGCGATAAGCCGACTTTCATTTTTGTTAATCATATT CACGCATAAGGTAACCTCTC
Downstream 100 bases:
>100_bases ACCTGCCCAATCAACATATTTACTTGGTTAATGTTACTTGGTTAATAACGATATAAAAATAAGGTGCCTTAGGGTGCCTT ATTTTTTTGGATCGTACTGT
Product: pyrrolo-quinoline quinone
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 854; Mature: 854
Protein sequence:
>854_residues MQKFLAILMALFALPLLIGGGYLLFLGGSPYYVIAGIMMLLTAWLLLKRHWGAYALYSLFIIGSVIWAVWEAGFYWWALA TRLGFPLIFGLLMLLPWVAKKMGNHKSKILTAPAGNTLHTTSSTGAAQVQPPVSQPLTSAPADTHNTGNPLYYWGLLASV VAGAAVSFGSMANNPTDKLGRLDLNTSTSDTTANLGDALSNGQQTPEGDWSAYGRTDYGQRYSPLSQINTENVKNLEVAW QIQTGDVKGPKDIGETTYQATPLKIGNALYLCTPHNWVMALDADTGESLWTFDPKVGENQKRQHQTCRGVSFYAGSQSPV NAIQASAATSANNTTLTAQKIEGNTFNNAPVQCDARIFIPTSDAKLYALNPETGQRCADFGDNGALDLMHNMPFKQAGFY YSTSPPVVAGNLVIVAGAVNDNYDINSPSGVIRAYDVRTGELKWNWDSGNPQQTAPLDVNDPNQVYKTSSPNSWSIATAD EKLGLAYFPMGNRTPDQLGVYRTPEEEKYATSVVALDLKTGQARWVQQFVHHDLWDMDTPAQPTLLDLKTDKGVQPALVV PTKQGDVYVLNRATGEPILPIKERPAPQGDLIAGEHAAPTQPYSALSFEPKRLTEKDMWGASLIDQMMCRIEFNKLNYEG RYTPPSLNGTLVYPGNFGTFNWGSLAVDPENGVMFGMPTYLAFTSKLIPKHSLGDVETNKGEQGVNANEGADYAVEMGPF LSPLGVPCQQPPWGTIAAANLSTGDIAYQRKNGTVQDLSPLPLKFELGVPGIGGPIITKGGVAFLSAATENNFRAYDLAT GDVLWNQRIPAGGQATPMTYLNSKSEQMVVLVAGGHGSVGTKIGDYVIAYKLAK
Sequences:
>Translated_854_residues MQKFLAILMALFALPLLIGGGYLLFLGGSPYYVIAGIMMLLTAWLLLKRHWGAYALYSLFIIGSVIWAVWEAGFYWWALA TRLGFPLIFGLLMLLPWVAKKMGNHKSKILTAPAGNTLHTTSSTGAAQVQPPVSQPLTSAPADTHNTGNPLYYWGLLASV VAGAAVSFGSMANNPTDKLGRLDLNTSTSDTTANLGDALSNGQQTPEGDWSAYGRTDYGQRYSPLSQINTENVKNLEVAW QIQTGDVKGPKDIGETTYQATPLKIGNALYLCTPHNWVMALDADTGESLWTFDPKVGENQKRQHQTCRGVSFYAGSQSPV NAIQASAATSANNTTLTAQKIEGNTFNNAPVQCDARIFIPTSDAKLYALNPETGQRCADFGDNGALDLMHNMPFKQAGFY YSTSPPVVAGNLVIVAGAVNDNYDINSPSGVIRAYDVRTGELKWNWDSGNPQQTAPLDVNDPNQVYKTSSPNSWSIATAD EKLGLAYFPMGNRTPDQLGVYRTPEEEKYATSVVALDLKTGQARWVQQFVHHDLWDMDTPAQPTLLDLKTDKGVQPALVV PTKQGDVYVLNRATGEPILPIKERPAPQGDLIAGEHAAPTQPYSALSFEPKRLTEKDMWGASLIDQMMCRIEFNKLNYEG RYTPPSLNGTLVYPGNFGTFNWGSLAVDPENGVMFGMPTYLAFTSKLIPKHSLGDVETNKGEQGVNANEGADYAVEMGPF LSPLGVPCQQPPWGTIAAANLSTGDIAYQRKNGTVQDLSPLPLKFELGVPGIGGPIITKGGVAFLSAATENNFRAYDLAT GDVLWNQRIPAGGQATPMTYLNSKSEQMVVLVAGGHGSVGTKIGDYVIAYKLAK >Mature_854_residues MQKFLAILMALFALPLLIGGGYLLFLGGSPYYVIAGIMMLLTAWLLLKRHWGAYALYSLFIIGSVIWAVWEAGFYWWALA TRLGFPLIFGLLMLLPWVAKKMGNHKSKILTAPAGNTLHTTSSTGAAQVQPPVSQPLTSAPADTHNTGNPLYYWGLLASV VAGAAVSFGSMANNPTDKLGRLDLNTSTSDTTANLGDALSNGQQTPEGDWSAYGRTDYGQRYSPLSQINTENVKNLEVAW QIQTGDVKGPKDIGETTYQATPLKIGNALYLCTPHNWVMALDADTGESLWTFDPKVGENQKRQHQTCRGVSFYAGSQSPV NAIQASAATSANNTTLTAQKIEGNTFNNAPVQCDARIFIPTSDAKLYALNPETGQRCADFGDNGALDLMHNMPFKQAGFY YSTSPPVVAGNLVIVAGAVNDNYDINSPSGVIRAYDVRTGELKWNWDSGNPQQTAPLDVNDPNQVYKTSSPNSWSIATAD EKLGLAYFPMGNRTPDQLGVYRTPEEEKYATSVVALDLKTGQARWVQQFVHHDLWDMDTPAQPTLLDLKTDKGVQPALVV PTKQGDVYVLNRATGEPILPIKERPAPQGDLIAGEHAAPTQPYSALSFEPKRLTEKDMWGASLIDQMMCRIEFNKLNYEG RYTPPSLNGTLVYPGNFGTFNWGSLAVDPENGVMFGMPTYLAFTSKLIPKHSLGDVETNKGEQGVNANEGADYAVEMGPF LSPLGVPCQQPPWGTIAAANLSTGDIAYQRKNGTVQDLSPLPLKFELGVPGIGGPIITKGGVAFLSAATENNFRAYDLAT GDVLWNQRIPAGGQATPMTYLNSKSEQMVVLVAGGHGSVGTKIGDYVIAYKLAK
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=866, Percent_Identity=40.9930715935335, Blast_Score=643, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 92321; Mature: 92321
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS00196 COPPER_BLUE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKFLAILMALFALPLLIGGGYLLFLGGSPYYVIAGIMMLLTAWLLLKRHWGAYALYSLF CHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH IIGSVIWAVWEAGFYWWALATRLGFPLIFGLLMLLPWVAKKMGNHKSKILTAPAGNTLHT HHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEE TSSTGAAQVQPPVSQPLTSAPADTHNTGNPLYYWGLLASVVAGAAVSFGSMANNPTDKLG CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHC RLDLNTSTSDTTANLGDALSNGQQTPEGDWSAYGRTDYGQRYSPLSQINTENVKNLEVAW EEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEE QIQTGDVKGPKDIGETTYQATPLKIGNALYLCTPHNWVMALDADTGESLWTFDPKVGENQ EEECCCCCCCHHHCCCCEEECCEEECCEEEEECCCCEEEEEECCCCCCEEEECCCCCCCH KRQHQTCRGVSFYAGSQSPVNAIQASAATSANNTTLTAQKIEGNTFNNAPVQCDARIFIP HHHHHHHCCEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEECCEEEEE TSDAKLYALNPETGQRCADFGDNGALDLMHNMPFKQAGFYYSTSPPVVAGNLVIVAGAVN CCCCEEEEECCCCCHHHHCCCCCCCCHHHHCCCHHHCCEEEECCCCEEECCEEEEEEECC DNYDINSPSGVIRAYDVRTGELKWNWDSGNPQQTAPLDVNDPNQVYKTSSPNSWSIATAD CCCCCCCCCCEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCHHEEECCCCCCEEEEECC EKLGLAYFPMGNRTPDQLGVYRTPEEEKYATSVVALDLKTGQARWVQQFVHHDLWDMDTP CCCCEEEECCCCCCHHHCCCEECCCHHHHEEEEEEEEECCCHHHHHHHHHHHHHCCCCCC AQPTLLDLKTDKGVQPALVVPTKQGDVYVLNRATGEPILPIKERPAPQGDLIAGEHAAPT CCCEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC QPYSALSFEPKRLTEKDMWGASLIDQMMCRIEFNKLNYEGRYTPPSLNGTLVYPGNFGTF CCCCCCCCCHHHCCHHHCCCHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEECCCCCCC NWGSLAVDPENGVMFGMPTYLAFTSKLIPKHSLGDVETNKGEQGVNANEGADYAVEMGPF CCCEEEECCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC LSPLGVPCQQPPWGTIAAANLSTGDIAYQRKNGTVQDLSPLPLKFELGVPGIGGPIITKG CCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECC GVAFLSAATENNFRAYDLATGDVLWNQRIPAGGQATPMTYLNSKSEQMVVLVAGGHGSVG CEEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCCC TKIGDYVIAYKLAK CHHCCEEEEEEECC >Mature Secondary Structure MQKFLAILMALFALPLLIGGGYLLFLGGSPYYVIAGIMMLLTAWLLLKRHWGAYALYSLF CHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH IIGSVIWAVWEAGFYWWALATRLGFPLIFGLLMLLPWVAKKMGNHKSKILTAPAGNTLHT HHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEE TSSTGAAQVQPPVSQPLTSAPADTHNTGNPLYYWGLLASVVAGAAVSFGSMANNPTDKLG CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHC RLDLNTSTSDTTANLGDALSNGQQTPEGDWSAYGRTDYGQRYSPLSQINTENVKNLEVAW EEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEE QIQTGDVKGPKDIGETTYQATPLKIGNALYLCTPHNWVMALDADTGESLWTFDPKVGENQ EEECCCCCCCHHHCCCCEEECCEEECCEEEEECCCCEEEEEECCCCCCEEEECCCCCCCH KRQHQTCRGVSFYAGSQSPVNAIQASAATSANNTTLTAQKIEGNTFNNAPVQCDARIFIP HHHHHHHCCEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEECCEEEEE TSDAKLYALNPETGQRCADFGDNGALDLMHNMPFKQAGFYYSTSPPVVAGNLVIVAGAVN CCCCEEEEECCCCCHHHHCCCCCCCCHHHHCCCHHHCCEEEECCCCEEECCEEEEEEECC DNYDINSPSGVIRAYDVRTGELKWNWDSGNPQQTAPLDVNDPNQVYKTSSPNSWSIATAD CCCCCCCCCCEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCHHEEECCCCCCEEEEECC EKLGLAYFPMGNRTPDQLGVYRTPEEEKYATSVVALDLKTGQARWVQQFVHHDLWDMDTP CCCCEEEECCCCCCHHHCCCEECCCHHHHEEEEEEEEECCCHHHHHHHHHHHHHCCCCCC AQPTLLDLKTDKGVQPALVVPTKQGDVYVLNRATGEPILPIKERPAPQGDLIAGEHAAPT CCCEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC QPYSALSFEPKRLTEKDMWGASLIDQMMCRIEFNKLNYEGRYTPPSLNGTLVYPGNFGTF CCCCCCCCCHHHCCHHHCCCHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEECCCCCCC NWGSLAVDPENGVMFGMPTYLAFTSKLIPKHSLGDVETNKGEQGVNANEGADYAVEMGPF CCCEEEECCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC LSPLGVPCQQPPWGTIAAANLSTGDIAYQRKNGTVQDLSPLPLKFELGVPGIGGPIITKG CCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECC GVAFLSAATENNFRAYDLATGDVLWNQRIPAGGQATPMTYLNSKSEQMVVLVAGGHGSVG CEEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCCC TKIGDYVIAYKLAK CHHCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]