| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is hmuU [H]
Identifier: 148653309
GI number: 148653309
Start: 1844304
End: 1845281
Strand: Direct
Name: hmuU [H]
Synonym: PsycPRwf_1509
Alternate gene names: 148653309
Gene position: 1844304-1845281 (Clockwise)
Preceding gene: 148653308
Following gene: 148653310
Centisome position: 61.91
GC content: 50.92
Gene sequence:
>978_bases ATGTCCAATTTTGTGCACCCACATAAGCGATTCTTGTCTACAACCGTAATCAGCTATGGCGCTGCTGTCTTGGTATCTGC CCTATTGATTTGGTTGAGCTTGGGCGTGGGATTTGGTCAGTGGTCTAGCCCCTCACAACTTGATGCCACCTTATGGCAGC TGCGCTATCCTCGGGTAGTCACCGCCTTATTGGTGGGCTTAGCACTATCAGTGAGTGGCGCTGCACTACAAGCTTTATTC GAAAATCCATTGGCCGATCCGAGCTTAATTGGTACCTCTGGTGGCGCAGCCTTAGGGGTGGTATTGATACTGGCTCTGGG CATCTCTGGCATTGGGGTGCCACTGGCCGCCTTCATAGGCAGCTTAGTGGTATGTCTGTTGGTGCTGGGTTGTCACCGAT TTTTGGGTGGTGGTCAGATGGGGCTGCTTATCTTAGGCTTTGTGATCAGCGCCTTTTGTGGCGCTTTGGTGAGTTTAATT TTGTTTTTGTCCAATGACATGGTGCTGCGCAGTGCCACCAATTGGCTGGCAGGTAGTATGGCTGAGGCAGGCTTTGTACC ACTGCGCTATGCCTTGATAAGCATTGCTTTGGGATTGGCCATTATTTTACCATTCGGACGGCAATTGGATGGACTAATGC TGGGGGAAACCACCGCGCTGTCTTTGGGTATAAAAGTCGGTCAGGTTCGGGCACTGGTCATCATTGCGTGCGCCCTACTG ACTGGGGCAGCGGTATCTATGTCTGGGGTGATTGGATTTATTGGAATGATGATTCCCAATTTACTCAGCCTATTGTTTGG CGGTGGTCGAATGCGCATTATGTTTTGGTCCGGCTGGTTTGGGGCCTTGTTTTTATTGGTCATAGACAGTCTGGCGCGCC ATGTGGCCTACCCCGTGGATGTGCCCATTGGCATCGTTTTGGCCTTAATCGGCGGCCCATTTTTTATTTGGTTATTTATT CGCAGCACCCGTAGCTGA
Upstream 100 bases:
>100_bases TTTGGGATGCCGATGAGTTCTTACGCTACGGACTCGCCTCACCTCAAGTAGTCGATAAGCTACATAAGCTGGCCAATTAG CAACTTGACTGAGATCTATT
Downstream 100 bases:
>100_bases CCAAGTGAGTTTTTTGTACTGGCTAGCGCTGCTCTAATCTTTTTTATGGCGGGCAGCTGGTCTTTTTGTGCTTAGTTATT ATGCACTCTTTTCTCTTAAG
Product: transport system permease
Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MSNFVHPHKRFLSTTVISYGAAVLVSALLIWLSLGVGFGQWSSPSQLDATLWQLRYPRVVTALLVGLALSVSGAALQALF ENPLADPSLIGTSGGAALGVVLILALGISGIGVPLAAFIGSLVVCLLVLGCHRFLGGGQMGLLILGFVISAFCGALVSLI LFLSNDMVLRSATNWLAGSMAEAGFVPLRYALISIALGLAIILPFGRQLDGLMLGETTALSLGIKVGQVRALVIIACALL TGAAVSMSGVIGFIGMMIPNLLSLLFGGGRMRIMFWSGWFGALFLLVIDSLARHVAYPVDVPIGIVLALIGGPFFIWLFI RSTRS
Sequences:
>Translated_325_residues MSNFVHPHKRFLSTTVISYGAAVLVSALLIWLSLGVGFGQWSSPSQLDATLWQLRYPRVVTALLVGLALSVSGAALQALF ENPLADPSLIGTSGGAALGVVLILALGISGIGVPLAAFIGSLVVCLLVLGCHRFLGGGQMGLLILGFVISAFCGALVSLI LFLSNDMVLRSATNWLAGSMAEAGFVPLRYALISIALGLAIILPFGRQLDGLMLGETTALSLGIKVGQVRALVIIACALL TGAAVSMSGVIGFIGMMIPNLLSLLFGGGRMRIMFWSGWFGALFLLVIDSLARHVAYPVDVPIGIVLALIGGPFFIWLFI RSTRS >Mature_324_residues SNFVHPHKRFLSTTVISYGAAVLVSALLIWLSLGVGFGQWSSPSQLDATLWQLRYPRVVTALLVGLALSVSGAALQALFE NPLADPSLIGTSGGAALGVVLILALGISGIGVPLAAFIGSLVVCLLVLGCHRFLGGGQMGLLILGFVISAFCGALVSLIL FLSNDMVLRSATNWLAGSMAEAGFVPLRYALISIALGLAIILPFGRQLDGLMLGETTALSLGIKVGQVRALVIIACALLT GAAVSMSGVIGFIGMMIPNLLSLLFGGGRMRIMFWSGWFGALFLLVIDSLARHVAYPVDVPIGIVLALIGGPFFIWLFIR STRS
Specific function: Part of the binding-protein-dependent transport system for hemin; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0609
COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790741, Length=289, Percent_Identity=35.2941176470588, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1788004, Length=292, Percent_Identity=34.9315068493151, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1790740, Length=287, Percent_Identity=33.1010452961672, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1786805, Length=277, Percent_Identity=35.7400722021661, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1786347, Length=314, Percent_Identity=30.2547770700637, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786804, Length=288, Percent_Identity=30.9027777777778, Blast_Score=80, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000522 [H]
Pfam domain/function: PF01032 FecCD [H]
EC number: NA
Molecular weight: Translated: 33966; Mature: 33835
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFVHPHKRFLSTTVISYGAAVLVSALLIWLSLGVGFGQWSSPSQLDATLWQLRYPRVV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH TALLVGLALSVSGAALQALFENPLADPSLIGTSGGAALGVVLILALGISGIGVPLAAFIG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH SLVVCLLVLGCHRFLGGGQMGLLILGFVISAFCGALVSLILFLSNDMVLRSATNWLAGSM HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH AEAGFVPLRYALISIALGLAIILPFGRQLDGLMLGETTALSLGIKVGQVRALVIIACALL HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCHHHHHHHHHHHHHHHH TGAAVSMSGVIGFIGMMIPNLLSLLFGGGRMRIMFWSGWFGALFLLVIDSLARHVAYPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCC VPIGIVLALIGGPFFIWLFIRSTRS CHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SNFVHPHKRFLSTTVISYGAAVLVSALLIWLSLGVGFGQWSSPSQLDATLWQLRYPRVV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH TALLVGLALSVSGAALQALFENPLADPSLIGTSGGAALGVVLILALGISGIGVPLAAFIG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH SLVVCLLVLGCHRFLGGGQMGLLILGFVISAFCGALVSLILFLSNDMVLRSATNWLAGSM HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH AEAGFVPLRYALISIALGLAIILPFGRQLDGLMLGETTALSLGIKVGQVRALVIIACALL HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCHHHHHHHHHHHHHHHH TGAAVSMSGVIGFIGMMIPNLLSLLFGGGRMRIMFWSGWFGALFLLVIDSLARHVAYPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCC VPIGIVLALIGGPFFIWLFIRSTRS CHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]
Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9026634; 11586360; 12142430 [H]