| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
Click here to switch to the map view.
The map label for this gene is 148653202
Identifier: 148653202
GI number: 148653202
Start: 1719425
End: 1720492
Strand: Direct
Name: 148653202
Synonym: PsycPRwf_1400
Alternate gene names: NA
Gene position: 1719425-1720492 (Clockwise)
Preceding gene: 148653201
Following gene: 148653203
Centisome position: 57.72
GC content: 49.53
Gene sequence:
>1068_bases ATGAGCCTAAGTAAGGACACCTCCAATGATAAAAGCGGTGCGACAGAAGCCAAGTCTGCCAATAACAGTACCGCTACCAC AGCCCGACAATGGGAGTTACTGAACCTATTAGAACGTGGGAGCTGGCGGGGCACCCATCATTTACATGAGCAGCTGCGCT TGGCCAACTTCGATGTCAGTCTACGCACTGTACAGCGTGATCTTAACGCGTTATCCAAACGCTTTCCTATCGAAAAAAAC AACGCCAACCCCCAAGGCTGGCGCTGGAAGGAAGATGCGCCTGTACAAAGCTTACCGCACATGAACTTATCGCAGGCTGT GGCGTTCAATATGGTTGAAGCCAATTTAGCCCAGCTGTTACCACCGGCCATATTAGATGAGCTTTTCCCTTGGTTTGACT TGGCGCGCCGTCAGCTTAAAGACAGCAAGATTACCCACAATTGGCTAGATAGAGTCCGCATTGAGCCTGCCACTCAGCCC CTCATTGCCCCTGAGATTTGCCGCGAATCCAAAGACTCTATTTATCAAGCCATTTTTTATGAGCGTCAAATCAGCGCGCA CTATACCCGCCGTGATAAAGATACCGCCGGTGAATATCATCTCAACCCCATTGCCATTGTGCAGCGCGGTGTGGTGATTT ATCTGCTTGCCACTAAGGTCGATGACCCTGATGAGGTGATACGCACCTTTGCTCTACACCGCTTTACTGAAGTTAAGGTA GAAGATACTCAAGCCGTCATTCCTGCCAACTTTGACCTAACCACCTATCTTGACTCAGGGGGTATGGGCTTTGCGCACTA CTTATTTAGAGAGCTGCCCAATCACGGTAAAAACACTCAGATAAAACTGGTCTTCAATGGCAAAGCCGGCACCAGCCTGA CTGAAAGTCGCCTCAGTGAAGATCAAAGAGTGGTCGATGATGAGCAAAGCAATACGCAGACCATCACGGCCACTGTGAAC TTGACCTCTCAGCTGGTATGGTGGCTGCGCGGCTTTGGCAAACGACTGATTGCTATTGAACCTGAGATATTGGCTCAAGC GGTTTATCAAGATGAAGCTGCTCAATAG
Upstream 100 bases:
>100_bases AAGCCCTACTACCTGCGGCTAAAATGTGCTATTTTTTGATAGGTGGTATGTGTTTTATTAACTAATCTATAATTGATGAT GACCTTTGTGAGCATAAGAT
Downstream 100 bases:
>100_bases CGGATAGACTCAAAAGCTAGCAAAAACCAACAAAGTGCGATAATCTTATTTATGACACTGCCTTTAAATGGTCTAATTTT TTTAATTGCCTTAATTCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Factor; Transcriptional Factor MdcH; Transcriptional Regulator
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MSLSKDTSNDKSGATEAKSANNSTATTARQWELLNLLERGSWRGTHHLHEQLRLANFDVSLRTVQRDLNALSKRFPIEKN NANPQGWRWKEDAPVQSLPHMNLSQAVAFNMVEANLAQLLPPAILDELFPWFDLARRQLKDSKITHNWLDRVRIEPATQP LIAPEICRESKDSIYQAIFYERQISAHYTRRDKDTAGEYHLNPIAIVQRGVVIYLLATKVDDPDEVIRTFALHRFTEVKV EDTQAVIPANFDLTTYLDSGGMGFAHYLFRELPNHGKNTQIKLVFNGKAGTSLTESRLSEDQRVVDDEQSNTQTITATVN LTSQLVWWLRGFGKRLIAIEPEILAQAVYQDEAAQ
Sequences:
>Translated_355_residues MSLSKDTSNDKSGATEAKSANNSTATTARQWELLNLLERGSWRGTHHLHEQLRLANFDVSLRTVQRDLNALSKRFPIEKN NANPQGWRWKEDAPVQSLPHMNLSQAVAFNMVEANLAQLLPPAILDELFPWFDLARRQLKDSKITHNWLDRVRIEPATQP LIAPEICRESKDSIYQAIFYERQISAHYTRRDKDTAGEYHLNPIAIVQRGVVIYLLATKVDDPDEVIRTFALHRFTEVKV EDTQAVIPANFDLTTYLDSGGMGFAHYLFRELPNHGKNTQIKLVFNGKAGTSLTESRLSEDQRVVDDEQSNTQTITATVN LTSQLVWWLRGFGKRLIAIEPEILAQAVYQDEAAQ >Mature_354_residues SLSKDTSNDKSGATEAKSANNSTATTARQWELLNLLERGSWRGTHHLHEQLRLANFDVSLRTVQRDLNALSKRFPIEKNN ANPQGWRWKEDAPVQSLPHMNLSQAVAFNMVEANLAQLLPPAILDELFPWFDLARRQLKDSKITHNWLDRVRIEPATQPL IAPEICRESKDSIYQAIFYERQISAHYTRRDKDTAGEYHLNPIAIVQRGVVIYLLATKVDDPDEVIRTFALHRFTEVKVE DTQAVIPANFDLTTYLDSGGMGFAHYLFRELPNHGKNTQIKLVFNGKAGTSLTESRLSEDQRVVDDEQSNTQTITATVNL TSQLVWWLRGFGKRLIAIEPEILAQAVYQDEAAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40390; Mature: 40259
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00362 RIBOSOMAL_S15
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSKDTSNDKSGATEAKSANNSTATTARQWELLNLLERGSWRGTHHLHEQLRLANFDVS CCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHH LRTVQRDLNALSKRFPIEKNNANPQGWRWKEDAPVQSLPHMNLSQAVAFNMVEANLAQLL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHC PPAILDELFPWFDLARRQLKDSKITHNWLDRVRIEPATQPLIAPEICRESKDSIYQAIFY CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHH ERQISAHYTRRDKDTAGEYHLNPIAIVQRGVVIYLLATKVDDPDEVIRTFALHRFTEVKV HHHHHHHHHCCCCCCCCCEECCHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHEEEE EDTQAVIPANFDLTTYLDSGGMGFAHYLFRELPNHGKNTQIKLVFNGKAGTSLTESRLSE ECCCEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHCC DQRVVDDEQSNTQTITATVNLTSQLVWWLRGFGKRLIAIEPEILAQAVYQDEAAQ HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCC >Mature Secondary Structure SLSKDTSNDKSGATEAKSANNSTATTARQWELLNLLERGSWRGTHHLHEQLRLANFDVS CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHH LRTVQRDLNALSKRFPIEKNNANPQGWRWKEDAPVQSLPHMNLSQAVAFNMVEANLAQLL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHC PPAILDELFPWFDLARRQLKDSKITHNWLDRVRIEPATQPLIAPEICRESKDSIYQAIFY CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHH ERQISAHYTRRDKDTAGEYHLNPIAIVQRGVVIYLLATKVDDPDEVIRTFALHRFTEVKV HHHHHHHHHCCCCCCCCCEECCHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHEEEE EDTQAVIPANFDLTTYLDSGGMGFAHYLFRELPNHGKNTQIKLVFNGKAGTSLTESRLSE ECCCEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHCC DQRVVDDEQSNTQTITATVNLTSQLVWWLRGFGKRLIAIEPEILAQAVYQDEAAQ HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA