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The map label for this gene is ydiU [C]

Identifier: 148653072

GI number: 148653072

Start: 1560379

End: 1561956

Strand: Direct

Name: ydiU [C]

Synonym: PsycPRwf_1268

Alternate gene names: 148653072

Gene position: 1560379-1561956 (Clockwise)

Preceding gene: 148653071

Following gene: 148653073

Centisome position: 52.38

GC content: 47.78

Gene sequence:

>1578_bases
ATGCAATACCATAATAGCTACGCCAAACTTGATCCTCGCTTGTACAACAAACAAATGCCCACAGCTTTGGATAACCCAAA
AGTTGGACACTTTAACCCAATAGTTGCCGCTCAAATTGGTTGGGATCAATCTTCTGAGCTTATGGACAACTGGGTAGATA
TTTTATCAGGCAATAAGGTTCCTGAAGACTTCGAGCCACTGGCTATGGCTTATGCCGGCCATCAGTTTGGTCAATGGGCC
GGTCAATTAGGTGATGGCCGCGGGCTATTAATGGCACAGGTCATTGACAAAAACTCAGAGCTGACCGATTTGCATCTTAA
AGGTGCCGGCTTGACGCCCTACTCTCGCATGGGCGATGGTAGAGCCGTTTTGCGTAGCACCATAAGAGAGTATTTGTGTG
GTCATGCCATGAGCGCATTGGGCGTTCGCTCTTCAAGCTCACTGGGCTTTGTTACCTCACAGACTCCCGTACGCCGCGAG
ACCGTAGAGACTGGCGCCGCTTTAATGCGCGTAGCCGATACCCACATTCGCTTAGGTCATGTCGAATGGATTGCAAGCTT
TGCCCCAGACTTATTGCCAAGCTTTACTCAGTATATGATTGAGACTTACTATCCTGAGCTGACTACCTCCAAGACGCCCG
TCGCGGACTTCATTGCTGCTGTAGTGGCCAATACCGCTACCATGATCGCTGACTGGCAGCTCGTTGGCTTCGCTCATGGT
GTTATGAATACAGACAACCTATCTATTACCGGCACTACCTTAGATTATGGACCATTTGGTTTTCTAGAGCGCTTTGATCC
TGCTTGGATTAACAACCACTCTGATTACTCTGGCCGTTATACTTATCAAAATCAGCCCGCGATCGGCCATTGGAACCTAA
ACGTGTGGATGATGCATTTTATGCAGCTGTCGGATAAGGTCTTATTCGGCACGTGTAAAGAGCGCTTAGACCGACAAACT
TTGGCCACCGCCTTATCTGAGTATGAAACTCACTTTATGCGCCACTATCAACACGGTATTTGTCGTAAATTAGGACTGCC
TTGGGAGGGGCTTGGTGATTTACAAAATAGTCAGCATCAGTATCAGCGTAGCACCGAAAGCATCAATACCACGTTAAAGC
TGGCCTTTGAACTGCTTGAGATTATTGAACACAATAAACTTGACTATACCAACAGTTTTCGCGCTCTTATGGCTGTGCTT
GAGCCAGGTAGTCACTCCCATGAAGATCAGCTACTTGCCAATATATCTCAAGAGCTCAGTGCTGAGCAGCAAACATTGTG
GGAAAATTGGCAACATAGATATCGTGCTCATATCAATGAGCAAATTGCGATAAATGACCACCGTTTTTCGGCCACACAAG
TGGTCGAGCAACTCGCCCAAGCCAACCCTGTCTATGTGCTGCGTAATGGCATGGCACAGCGCGCTATTGAACAGGCGCAG
GCGGGCGACTTATCTGAGGTGGATCGCTTATTTAAGCTGCTAAGGACCCCTTATAACGTCAATGACATGGCGAAGCTAAC
AGACTATACACCGCCGGCCAGAGAAGATAAGCCGCTGGTAATTAGCTGCTCATCATAA

Upstream 100 bases:

>100_bases
CTCTCAGGTTTGTTAAACTTCTGTTTGTTAGACTTCTATCAGACAACTTATCATCCATCTTTTTATCACCCATCTTTAAA
TTCTTAAAAAGTCGATACTT

Downstream 100 bases:

>100_bases
ATATTTTGGGCGCCATTAAATATTTTTCATGTAAAAAACACCTTCTATAGCTGCTTAAGCACCCTATATGAGATGTAAAC
CTGTATAATTGTGCTATTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MQYHNSYAKLDPRLYNKQMPTALDNPKVGHFNPIVAAQIGWDQSSELMDNWVDILSGNKVPEDFEPLAMAYAGHQFGQWA
GQLGDGRGLLMAQVIDKNSELTDLHLKGAGLTPYSRMGDGRAVLRSTIREYLCGHAMSALGVRSSSSLGFVTSQTPVRRE
TVETGAALMRVADTHIRLGHVEWIASFAPDLLPSFTQYMIETYYPELTTSKTPVADFIAAVVANTATMIADWQLVGFAHG
VMNTDNLSITGTTLDYGPFGFLERFDPAWINNHSDYSGRYTYQNQPAIGHWNLNVWMMHFMQLSDKVLFGTCKERLDRQT
LATALSEYETHFMRHYQHGICRKLGLPWEGLGDLQNSQHQYQRSTESINTTLKLAFELLEIIEHNKLDYTNSFRALMAVL
EPGSHSHEDQLLANISQELSAEQQTLWENWQHRYRAHINEQIAINDHRFSATQVVEQLAQANPVYVLRNGMAQRAIEQAQ
AGDLSEVDRLFKLLRTPYNVNDMAKLTDYTPPAREDKPLVISCSS

Sequences:

>Translated_525_residues
MQYHNSYAKLDPRLYNKQMPTALDNPKVGHFNPIVAAQIGWDQSSELMDNWVDILSGNKVPEDFEPLAMAYAGHQFGQWA
GQLGDGRGLLMAQVIDKNSELTDLHLKGAGLTPYSRMGDGRAVLRSTIREYLCGHAMSALGVRSSSSLGFVTSQTPVRRE
TVETGAALMRVADTHIRLGHVEWIASFAPDLLPSFTQYMIETYYPELTTSKTPVADFIAAVVANTATMIADWQLVGFAHG
VMNTDNLSITGTTLDYGPFGFLERFDPAWINNHSDYSGRYTYQNQPAIGHWNLNVWMMHFMQLSDKVLFGTCKERLDRQT
LATALSEYETHFMRHYQHGICRKLGLPWEGLGDLQNSQHQYQRSTESINTTLKLAFELLEIIEHNKLDYTNSFRALMAVL
EPGSHSHEDQLLANISQELSAEQQTLWENWQHRYRAHINEQIAINDHRFSATQVVEQLAQANPVYVLRNGMAQRAIEQAQ
AGDLSEVDRLFKLLRTPYNVNDMAKLTDYTPPAREDKPLVISCSS
>Mature_525_residues
MQYHNSYAKLDPRLYNKQMPTALDNPKVGHFNPIVAAQIGWDQSSELMDNWVDILSGNKVPEDFEPLAMAYAGHQFGQWA
GQLGDGRGLLMAQVIDKNSELTDLHLKGAGLTPYSRMGDGRAVLRSTIREYLCGHAMSALGVRSSSSLGFVTSQTPVRRE
TVETGAALMRVADTHIRLGHVEWIASFAPDLLPSFTQYMIETYYPELTTSKTPVADFIAAVVANTATMIADWQLVGFAHG
VMNTDNLSITGTTLDYGPFGFLERFDPAWINNHSDYSGRYTYQNQPAIGHWNLNVWMMHFMQLSDKVLFGTCKERLDRQT
LATALSEYETHFMRHYQHGICRKLGLPWEGLGDLQNSQHQYQRSTESINTTLKLAFELLEIIEHNKLDYTNSFRALMAVL
EPGSHSHEDQLLANISQELSAEQQTLWENWQHRYRAHINEQIAINDHRFSATQVVEQLAQANPVYVLRNGMAQRAIEQAQ
AGDLSEVDRLFKLLRTPYNVNDMAKLTDYTPPAREDKPLVISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=560, Percent_Identity=33.3928571428571, Blast_Score=266, Evalue=4e-71,
Organism=Escherichia coli, GI1787999, Length=517, Percent_Identity=39.0715667311412, Blast_Score=325, Evalue=5e-90,
Organism=Saccharomyces cerevisiae, GI6325034, Length=455, Percent_Identity=30.5494505494506, Blast_Score=191, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 59319; Mature: 59319

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYHNSYAKLDPRLYNKQMPTALDNPKVGHFNPIVAAQIGWDQSSELMDNWVDILSGNKV
CCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
PEDFEPLAMAYAGHQFGQWAGQLGDGRGLLMAQVIDKNSELTDLHLKGAGLTPYSRMGDG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCEEEEEEECCCCCCHHHCCCC
RAVLRSTIREYLCGHAMSALGVRSSSSLGFVTSQTPVRRETVETGAALMRVADTHIRLGH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHEEHHH
VEWIASFAPDLLPSFTQYMIETYYPELTTSKTPVADFIAAVVANTATMIADWQLVGFAHG
HHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
VMNTDNLSITGTTLDYGPFGFLERFDPAWINNHSDYSGRYTYQNQPAIGHWNLNVWMMHF
CCCCCCEEEEEEECCCCCCHHHHHCCCHHCCCCCCCCCEEEECCCCCEEEECHHHHHHHH
MQLSDKVLFGTCKERLDRQTLATALSEYETHFMRHYQHGICRKLGLPWEGLGDLQNSQHQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
YQRSTESINTTLKLAFELLEIIEHNKLDYTNSFRALMAVLEPGSHSHEDQLLANISQELS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AEQQTLWENWQHRYRAHINEQIAINDHRFSATQVVEQLAQANPVYVLRNGMAQRAIEQAQ
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
AGDLSEVDRLFKLLRTPYNVNDMAKLTDYTPPAREDKPLVISCSS
CCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MQYHNSYAKLDPRLYNKQMPTALDNPKVGHFNPIVAAQIGWDQSSELMDNWVDILSGNKV
CCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
PEDFEPLAMAYAGHQFGQWAGQLGDGRGLLMAQVIDKNSELTDLHLKGAGLTPYSRMGDG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCEEEEEEECCCCCCHHHCCCC
RAVLRSTIREYLCGHAMSALGVRSSSSLGFVTSQTPVRRETVETGAALMRVADTHIRLGH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHEEHHH
VEWIASFAPDLLPSFTQYMIETYYPELTTSKTPVADFIAAVVANTATMIADWQLVGFAHG
HHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
VMNTDNLSITGTTLDYGPFGFLERFDPAWINNHSDYSGRYTYQNQPAIGHWNLNVWMMHF
CCCCCCEEEEEEECCCCCCHHHHHCCCHHCCCCCCCCCEEEECCCCCEEEECHHHHHHHH
MQLSDKVLFGTCKERLDRQTLATALSEYETHFMRHYQHGICRKLGLPWEGLGDLQNSQHQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
YQRSTESINTTLKLAFELLEIIEHNKLDYTNSFRALMAVLEPGSHSHEDQLLANISQELS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AEQQTLWENWQHRYRAHINEQIAINDHRFSATQVVEQLAQANPVYVLRNGMAQRAIEQAQ
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
AGDLSEVDRLFKLLRTPYNVNDMAKLTDYTPPAREDKPLVISCSS
CCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]