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The map label for this gene is yafC [H]

Identifier: 148652987

GI number: 148652987

Start: 1443217

End: 1444116

Strand: Direct

Name: yafC [H]

Synonym: PsycPRwf_1181

Alternate gene names: 148652987

Gene position: 1443217-1444116 (Clockwise)

Preceding gene: 148652984

Following gene: 148652994

Centisome position: 48.45

GC content: 44.22

Gene sequence:

>900_bases
ATGAAAGTTACCCTTAATGAGCTCGATACCTTTATAAGTATTGTGGATACCGGCAGCATCAGCCAAGCAGCAGAATACCT
CGATGTTACGGTATCAGCGGTCAGCCGATCGTTAGCAAGATTGGAGAAAAAGTTAGACACCGCCTTGTTTAGACGGACAA
CAAGACGCTTGGCGCTGACCCAAGAGGGCGAGATGTATTTGGCACGGATACGCGGTGTATTAAATGATTTAGAGGCCGCG
GAGGATATGCTGATAAAAAATAAAGCGGTGCCCTCAGGCAAGCTAAGAATTGATGCGGCCACCCCTTTTATGCTGCATGT
CATTGCGCCGCTGATGACAAAATATAGTCAAGCCTATCCACAGATCGATATTGAGCTGGTAAGCAATGAAAACTTGGTGG
ATTTATTAGAAGAACGCACCGATGTGGCGATACGTATTGGCGAGCTAAAAGACTCCACCTTAAATGCCACGCCGCTGGGC
TTAAGTCAGATTCGAATTCTAGCCAGCCCAGCCTATTTACAGCGACAGGGCACACCGCAAAGTGTAGAAGACTTAGCTCA
CCATCAGCTACTGGGATTTAATGCTCTACCTAAGCTTAATGATTGGCCAATATATGATGCCTTTAATAACCTATTTCACG
CTCAGACCAATATCAAGGCCGATAGTGGTGAGACCTTAAGACAACTGGCTTTATGCGGTACTGGCATTGTCTGCTTATCT
GACTTTATGACCCAGCAAGATATTAAAGAAGGACGCTTGATTGAGCTGTTTGCATCAAGCACCATAAAAATGCAGCAGCC
CATTAATCTGGTCTACTATAAAAATAGAAAACTGTCACAGCGGGTCAGCTCATTTATTGATTTTATGAAAAAAGAGTTTG
GTAGCTCTAAGCCATTTTAA

Upstream 100 bases:

>100_bases
AGCGTCCTAAGCAGTATTGCTTGTTGAGAGACAGTATATATAGACAGTTAATTGATAAGAAGGCATAGTAAATCAAAATT
CTTTTGCATAAGAGTCAATA

Downstream 100 bases:

>100_bases
TCTGTATTTTTATATGGCGGTATGCGCTCTAAAACCAGCCTTCTTGCAAAAGATGCTCAGTATTACTCAGCTCAAACCCA
GTGACCAAATCATAGAAGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKVTLNELDTFISIVDTGSISQAAEYLDVTVSAVSRSLARLEKKLDTALFRRTTRRLALTQEGEMYLARIRGVLNDLEAA
EDMLIKNKAVPSGKLRIDAATPFMLHVIAPLMTKYSQAYPQIDIELVSNENLVDLLEERTDVAIRIGELKDSTLNATPLG
LSQIRILASPAYLQRQGTPQSVEDLAHHQLLGFNALPKLNDWPIYDAFNNLFHAQTNIKADSGETLRQLALCGTGIVCLS
DFMTQQDIKEGRLIELFASSTIKMQQPINLVYYKNRKLSQRVSSFIDFMKKEFGSSKPF

Sequences:

>Translated_299_residues
MKVTLNELDTFISIVDTGSISQAAEYLDVTVSAVSRSLARLEKKLDTALFRRTTRRLALTQEGEMYLARIRGVLNDLEAA
EDMLIKNKAVPSGKLRIDAATPFMLHVIAPLMTKYSQAYPQIDIELVSNENLVDLLEERTDVAIRIGELKDSTLNATPLG
LSQIRILASPAYLQRQGTPQSVEDLAHHQLLGFNALPKLNDWPIYDAFNNLFHAQTNIKADSGETLRQLALCGTGIVCLS
DFMTQQDIKEGRLIELFASSTIKMQQPINLVYYKNRKLSQRVSSFIDFMKKEFGSSKPF
>Mature_299_residues
MKVTLNELDTFISIVDTGSISQAAEYLDVTVSAVSRSLARLEKKLDTALFRRTTRRLALTQEGEMYLARIRGVLNDLEAA
EDMLIKNKAVPSGKLRIDAATPFMLHVIAPLMTKYSQAYPQIDIELVSNENLVDLLEERTDVAIRIGELKDSTLNATPLG
LSQIRILASPAYLQRQGTPQSVEDLAHHQLLGFNALPKLNDWPIYDAFNNLFHAQTNIKADSGETLRQLALCGTGIVCLS
DFMTQQDIKEGRLIELFASSTIKMQQPINLVYYKNRKLSQRVSSFIDFMKKEFGSSKPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=44.6735395189003, Blast_Score=277, Evalue=6e-76,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=31.3793103448276, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=27.1477663230241, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=306, Percent_Identity=29.4117647058824, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=26.158940397351, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=27.7397260273973, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=31.640625, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=25.8389261744966, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789440, Length=257, Percent_Identity=27.6264591439689, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=23.3676975945017, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788706, Length=299, Percent_Identity=23.7458193979933, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=157, Percent_Identity=29.9363057324841, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=306, Percent_Identity=23.202614379085, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI145693105, Length=198, Percent_Identity=25.2525252525253, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790399, Length=302, Percent_Identity=23.5099337748344, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790011, Length=311, Percent_Identity=24.1157556270096, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33528; Mature: 33528

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTLNELDTFISIVDTGSISQAAEYLDVTVSAVSRSLARLEKKLDTALFRRTTRRLALT
CEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QEGEMYLARIRGVLNDLEAAEDMLIKNKAVPSGKLRIDAATPFMLHVIAPLMTKYSQAYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCC
QIDIELVSNENLVDLLEERTDVAIRIGELKDSTLNATPLGLSQIRILASPAYLQRQGTPQ
CEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCH
SVEDLAHHQLLGFNALPKLNDWPIYDAFNNLFHAQTNIKADSGETLRQLALCGTGIVCLS
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHH
DFMTQQDIKEGRLIELFASSTIKMQQPINLVYYKNRKLSQRVSSFIDFMKKEFGSSKPF
HHHHHHHHHCCCEEEEECCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKVTLNELDTFISIVDTGSISQAAEYLDVTVSAVSRSLARLEKKLDTALFRRTTRRLALT
CEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QEGEMYLARIRGVLNDLEAAEDMLIKNKAVPSGKLRIDAATPFMLHVIAPLMTKYSQAYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCC
QIDIELVSNENLVDLLEERTDVAIRIGELKDSTLNATPLGLSQIRILASPAYLQRQGTPQ
CEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCH
SVEDLAHHQLLGFNALPKLNDWPIYDAFNNLFHAQTNIKADSGETLRQLALCGTGIVCLS
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHH
DFMTQQDIKEGRLIELFASSTIKMQQPINLVYYKNRKLSQRVSSFIDFMKKEFGSSKPF
HHHHHHHHHCCCEEEEECCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]