| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is 148652861
Identifier: 148652861
GI number: 148652861
Start: 1273804
End: 1275387
Strand: Direct
Name: 148652861
Synonym: PsycPRwf_1054
Alternate gene names: NA
Gene position: 1273804-1275387 (Clockwise)
Preceding gene: 148652860
Following gene: 148652864
Centisome position: 42.76
GC content: 37.69
Gene sequence:
>1584_bases ATGAAATCTACCAAATGTTTTTCTCCGTTGTTGACAGCAGAGGTCAGTGGAAGACAGGATGCTTTTACAGCTATTTATTT AGGTGAAGGTAATGATCAATATATAGTTGGCAATGGCTTATTGTATGGATTTAGTTTCGGAGAGTCAGGTGATGACTTAT TTGATATTCAACAAGCAATAAGTGGATCTTATAATTTATATGCTGGATCTGGTAGTGATACTGTTAATGCTGGCAGTATT GCAGGTCTTGTAGACTTAGGTAGTGGGAATCCCATGCCTTCTGAATATTTAGCAACTTATAACAACAGTACTTTAAGTCT AGGAAATGATAATAATGTAGATTTAGCAAGTGATATTAATACTGTAAATGTGACTGGAAGTATAAGCGGCGGTACGATAT TGGGTGGTGCTGGTATTGATAAAATTTACGTTACAAATGGTTATGTCGATAGTGGGGCCACTATTAATCTTGGTGCAAAT AATGACTCATTAACAGCAATGGGTCTTAATAATAGCTCTACAGTTGACATGGGTGATGGTGACGATGTAGTAACTATCAA AACTGATATAGGAAATGGTACAGGCACGCCAACTTTAGGTCTTGGTTCTGGTAATGATACGTTAACTGTGGGTAATAGTG CTTCAAATGATGGTAGATTGTTATCGGGCAACATTGATATGGGTACAGGTTATGATAAAGCCTATATAAATGGAACTATA AGTGGCGGTACCTTAAATATGGGAAGTGGCGGAAGTATAGTTCAAATCCGTACACTAACGGGTGGTAGTGTTACGTCAAC AGATGGTGTTGATGATATCAAGGTGACGGGCGCAATGTCTGGAGGTAGCATCAGTACCGGTAATGATAATGACAAAGTCA TTATTGAAGGTATTATGAAGGGTGATTCAAGTATTAATACCGGTTCAGGAAATGACACTGTTGAAGTCACCCAGTCTGTA GAAAAAAGTGGTATATACAGTCCAAGTCTAGACTTAGGCACAGGAGACGATTCATTTAAGTCTTCGCAATTTAAGAGTGG TACCCTAAGTATGGGTGATGGTATTGATATTGTTGATATAACCGACACTAGTAGTGGGATGAGTGGCGGTACTATTGATC TAGGTGCAGGTAATGACACTATTAATTTAGCTAATATGACTGGTGGCACAATCAATGGTGGCGTCGGAAATGATAATATT AATATTGTTAAATACACTGGTGGCACCATAAATGGTGGTGATGGTATAGATACAGTTCATATTACTGGTAGTGGTAGTTC TCTTACTACGAGCAGTATATCAGCAGTTGAAGTATTAGATTTAGGAACTGGTGATATGGGTAATACTTTTAGTGCAAGTT TTAACCAAATCCGTACTAGCTCGCTTTCAGGATTATTTATTGCAGGTGATGCAAAGGATACCGTCAATTTAAGTGGTGCA GGCAATTGGACGAAATCTTCTACTATTACTACTGGTGATGATGGTAATACTTACTATGCGTATACTGGCAAGTATTTATC ATATTCTGATCAGGTTATTTATATTGACACTGATATTGCAGCTGCAGATAAGGTTATTTTGTAA
Upstream 100 bases:
>100_bases GATATATTGAGATTTTTTACAACCGTCAACGAATACAAAAAGGGTTAGGATTTAAGTCACCTACTCAAGTATTCCAAGAC TTTTACCGTCAGGCTGCCTG
Downstream 100 bases:
>100_bases TAACTTGACTTTTTGAATAAAAAAACGCCCTCGCAATGAATAATGCCAGTCAGTTAATGCTGACTGGTATTTTTTTTGGA TATTTTCGCGGTTTACCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MKSTKCFSPLLTAEVSGRQDAFTAIYLGEGNDQYIVGNGLLYGFSFGESGDDLFDIQQAISGSYNLYAGSGSDTVNAGSI AGLVDLGSGNPMPSEYLATYNNSTLSLGNDNNVDLASDINTVNVTGSISGGTILGGAGIDKIYVTNGYVDSGATINLGAN NDSLTAMGLNNSSTVDMGDGDDVVTIKTDIGNGTGTPTLGLGSGNDTLTVGNSASNDGRLLSGNIDMGTGYDKAYINGTI SGGTLNMGSGGSIVQIRTLTGGSVTSTDGVDDIKVTGAMSGGSISTGNDNDKVIIEGIMKGDSSINTGSGNDTVEVTQSV EKSGIYSPSLDLGTGDDSFKSSQFKSGTLSMGDGIDIVDITDTSSGMSGGTIDLGAGNDTINLANMTGGTINGGVGNDNI NIVKYTGGTINGGDGIDTVHITGSGSSLTTSSISAVEVLDLGTGDMGNTFSASFNQIRTSSLSGLFIAGDAKDTVNLSGA GNWTKSSTITTGDDGNTYYAYTGKYLSYSDQVIYIDTDIAAADKVIL
Sequences:
>Translated_527_residues MKSTKCFSPLLTAEVSGRQDAFTAIYLGEGNDQYIVGNGLLYGFSFGESGDDLFDIQQAISGSYNLYAGSGSDTVNAGSI AGLVDLGSGNPMPSEYLATYNNSTLSLGNDNNVDLASDINTVNVTGSISGGTILGGAGIDKIYVTNGYVDSGATINLGAN NDSLTAMGLNNSSTVDMGDGDDVVTIKTDIGNGTGTPTLGLGSGNDTLTVGNSASNDGRLLSGNIDMGTGYDKAYINGTI SGGTLNMGSGGSIVQIRTLTGGSVTSTDGVDDIKVTGAMSGGSISTGNDNDKVIIEGIMKGDSSINTGSGNDTVEVTQSV EKSGIYSPSLDLGTGDDSFKSSQFKSGTLSMGDGIDIVDITDTSSGMSGGTIDLGAGNDTINLANMTGGTINGGVGNDNI NIVKYTGGTINGGDGIDTVHITGSGSSLTTSSISAVEVLDLGTGDMGNTFSASFNQIRTSSLSGLFIAGDAKDTVNLSGA GNWTKSSTITTGDDGNTYYAYTGKYLSYSDQVIYIDTDIAAADKVIL >Mature_527_residues MKSTKCFSPLLTAEVSGRQDAFTAIYLGEGNDQYIVGNGLLYGFSFGESGDDLFDIQQAISGSYNLYAGSGSDTVNAGSI AGLVDLGSGNPMPSEYLATYNNSTLSLGNDNNVDLASDINTVNVTGSISGGTILGGAGIDKIYVTNGYVDSGATINLGAN NDSLTAMGLNNSSTVDMGDGDDVVTIKTDIGNGTGTPTLGLGSGNDTLTVGNSASNDGRLLSGNIDMGTGYDKAYINGTI SGGTLNMGSGGSIVQIRTLTGGSVTSTDGVDDIKVTGAMSGGSISTGNDNDKVIIEGIMKGDSSINTGSGNDTVEVTQSV EKSGIYSPSLDLGTGDDSFKSSQFKSGTLSMGDGIDIVDITDTSSGMSGGTIDLGAGNDTINLANMTGGTINGGVGNDNI NIVKYTGGTINGGDGIDTVHITGSGSSLTTSSISAVEVLDLGTGDMGNTFSASFNQIRTSSLSGLFIAGDAKDTVNLSGA GNWTKSSTITTGDDGNTYYAYTGKYLSYSDQVIYIDTDIAAADKVIL
Specific function: Unknown
COG id: COG2931
COG function: function code Q; RTX toxins and related Ca2+-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53073; Mature: 53073
Theoretical pI: Translated: 3.68; Mature: 3.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSTKCFSPLLTAEVSGRQDAFTAIYLGEGNDQYIVGNGLLYGFSFGESGDDLFDIQQAI CCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEECCEEEEEECCCCCCHHHHHHHHH SGSYNLYAGSGSDTVNAGSIAGLVDLGSGNPMPSEYLATYNNSTLSLGNDNNVDLASDIN CCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHEEEECCCEEEECCCCCEEEECCCE TVNVTGSISGGTILGGAGIDKIYVTNGYVDSGATINLGANNDSLTAMGLNNSSTVDMGDG EEEEEEECCCCEEEECCCCCEEEEECCEECCCCEEEECCCCCCEEEEECCCCCEEECCCC DDVVTIKTDIGNGTGTPTLGLGSGNDTLTVGNSASNDGRLLSGNIDMGTGYDKAYINGTI CCEEEEEEECCCCCCCCEEEECCCCCEEEECCCCCCCCEEEECCCCCCCCCCEEEEEEEE SGGTLNMGSGGSIVQIRTLTGGSVTSTDGVDDIKVTGAMSGGSISTGNDNDKVIIEGIMK CCCEEECCCCCCEEEEEEECCCCEECCCCCCCEEEEEEECCCEECCCCCCCEEEEEEEEC GDSSINTGSGNDTVEVTQSVEKSGIYSPSLDLGTGDDSFKSSQFKSGTLSMGDGIDIVDI CCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEE TDTSSGMSGGTIDLGAGNDTINLANMTGGTINGGVGNDNINIVKYTGGTINGGDGIDTVH ECCCCCCCCCEEEECCCCCEEEEEECCCCEEECCCCCCCEEEEEEECCEECCCCCEEEEE ITGSGSSLTTSSISAVEVLDLGTGDMGNTFSASFNQIRTSSLSGLFIAGDAKDTVNLSGA EECCCCCEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEECCC GNWTKSSTITTGDDGNTYYAYTGKYLSYSDQVIYIDTDIAAADKVIL CCCCCCCEEEECCCCCEEEEEECCEEEECCCEEEEECCCCCCCEECC >Mature Secondary Structure MKSTKCFSPLLTAEVSGRQDAFTAIYLGEGNDQYIVGNGLLYGFSFGESGDDLFDIQQAI CCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEECCEEEEEECCCCCCHHHHHHHHH SGSYNLYAGSGSDTVNAGSIAGLVDLGSGNPMPSEYLATYNNSTLSLGNDNNVDLASDIN CCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHEEEECCCEEEECCCCCEEEECCCE TVNVTGSISGGTILGGAGIDKIYVTNGYVDSGATINLGANNDSLTAMGLNNSSTVDMGDG EEEEEEECCCCEEEECCCCCEEEEECCEECCCCEEEECCCCCCEEEEECCCCCEEECCCC DDVVTIKTDIGNGTGTPTLGLGSGNDTLTVGNSASNDGRLLSGNIDMGTGYDKAYINGTI CCEEEEEEECCCCCCCCEEEECCCCCEEEECCCCCCCCEEEECCCCCCCCCCEEEEEEEE SGGTLNMGSGGSIVQIRTLTGGSVTSTDGVDDIKVTGAMSGGSISTGNDNDKVIIEGIMK CCCEEECCCCCCEEEEEEECCCCEECCCCCCCEEEEEEECCCEECCCCCCCEEEEEEEEC GDSSINTGSGNDTVEVTQSVEKSGIYSPSLDLGTGDDSFKSSQFKSGTLSMGDGIDIVDI CCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEE TDTSSGMSGGTIDLGAGNDTINLANMTGGTINGGVGNDNINIVKYTGGTINGGDGIDTVH ECCCCCCCCCEEEECCCCCEEEEEECCCCEEECCCCCCCEEEEEEECCEECCCCCEEEEE ITGSGSSLTTSSISAVEVLDLGTGDMGNTFSASFNQIRTSSLSGLFIAGDAKDTVNLSGA EECCCCCEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEECCC GNWTKSSTITTGDDGNTYYAYTGKYLSYSDQVIYIDTDIAAADKVIL CCCCCCCEEEECCCCCEEEEEECCEEEECCCEEEEECCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA