| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is pucA [H]
Identifier: 148652817
GI number: 148652817
Start: 1202130
End: 1203452
Strand: Direct
Name: pucA [H]
Synonym: PsycPRwf_1010
Alternate gene names: 148652817
Gene position: 1202130-1203452 (Clockwise)
Preceding gene: 148652816
Following gene: 148652818
Centisome position: 40.35
GC content: 49.81
Gene sequence:
>1323_bases ATGAGCAATCAGATATCTGATATTCTGCAGCTGGCCGATCAAGCCATCGCCACTGATACAGAGGCGGTGCTTGCAACAGT CGTACACATTGAAGGCTCTGCCTACCGTAAGCCTGGTGCCATGATGCTCATTTGCGCTGATGGTCAGTCGGTGGGTATGA TAAGTGGCGGCTGCTTAGAGCCGCATATTATAAAAAAGGCGTTATGGCTGACCCGAAATGGGCCAGTGGTACAGGTCTAT CAAACGGGTGAAGACTTAACCGAGGAGGCTGCTGCAAAGACGCAGGCTGTCGATGATATTGAGTTTAGTATTCAAACAGA GCTTAATTTTGGTCTGGGCTGTAATGGGCGCGTGCATGTGCTGTTTGAGCGCTTAGATACTGCCAGAGCGTATCTTAAGA TGATTAGACAGGTTAGGCAAACCCAGCAGCCAGTGACAATGGCGACGTTAATCCGCTCACAAGAGGCGAGCCACCCAGTG GGCTTACACGTTCAGTTAACGTCAGATTCTAATGCAGTACAAGTCGCTTCTGCTAATAACATTACCGCTGATTGTGATGA TTTGATTAATCAAGCCATTCAAAGCTTGTCGGCCAAATATGTGTCAGCCAAACACATAGGGTCTGGCCTAACACAAAAAC CAACCGAACAAAAACCAACCGATTTTGCCACCATCACCAGTGTGGCTCAGCAAGATATCACTCAGCCAGTACAGACTCAG TGGCTGGTTCAGCAGCTGCAACCACAAAAGCGGCTGCTTATCTGCGGCGCTGGCAATGATGTGCAGCCACTGGTGCGCTT AGCCAAAATGCAGGACTGGCACGTCACTGTGATCGACAGTCGCTCTCACTATGCTACTCGTTCACGCTTTATGGCGGCTG ATGAGGTGCAGTGTGTAGCGCTTGAGGATACCCAGACCTTATTGGCACTGAGCCAAAATGCAGCGGTGGCAGTGATGTCG CACAGCCTTACTCAAGATAGAGCTCGGCTACAAGTGCTGCTTGCCAATCCGCCTTTATATTTAGGACAGCTGGGCCCCAA ATACCGTACTGAGCGCCTAATCGATGAGATTAAGCAAGCGTATCAGGGCGATGTTAATGGCTTAGAGCAAGGCATTGATC AGCTTAATTATCCTATCGGCTACAAGCTAGGCGGTGATGGGCCTGAGGCGTTGGCGCTAGGAGTTATGGCGCAAATCAGT GCAGTGATGCATGGTAAAGAAAACACACTCAGTGCGTCTATAAATGCAAAGAAGATGAAGCAGGCGTCTCAGCCGAAGAC AGCGTCAGATAGACGGTATAAAGACAGATGGGCCGCTCAGTGA
Upstream 100 bases:
>100_bases ATGCGGTCTATAACGCGGTTGGGGTACGTATTTATGACTTTCCGATTACGCTAGATAAGCTGATTGATCACTTACCTGAC TAACAACAAAAGGTACCCTT
Downstream 100 bases:
>100_bases TAAGGGTGGTTTTAATCAAATGAGTGTTTCTAAATGAGTGTGTTTAAATGAGTGTGTCTAGCTTATCCAAACTATCCGAA TTATCTACTGTTCCTGTATC
Product: hypothetical protein
Products: NA
Alternate protein names: XDHase subunit A [H]
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MSNQISDILQLADQAIATDTEAVLATVVHIEGSAYRKPGAMMLICADGQSVGMISGGCLEPHIIKKALWLTRNGPVVQVY QTGEDLTEEAAAKTQAVDDIEFSIQTELNFGLGCNGRVHVLFERLDTARAYLKMIRQVRQTQQPVTMATLIRSQEASHPV GLHVQLTSDSNAVQVASANNITADCDDLINQAIQSLSAKYVSAKHIGSGLTQKPTEQKPTDFATITSVAQQDITQPVQTQ WLVQQLQPQKRLLICGAGNDVQPLVRLAKMQDWHVTVIDSRSHYATRSRFMAADEVQCVALEDTQTLLALSQNAAVAVMS HSLTQDRARLQVLLANPPLYLGQLGPKYRTERLIDEIKQAYQGDVNGLEQGIDQLNYPIGYKLGGDGPEALALGVMAQIS AVMHGKENTLSASINAKKMKQASQPKTASDRRYKDRWAAQ
Sequences:
>Translated_440_residues MSNQISDILQLADQAIATDTEAVLATVVHIEGSAYRKPGAMMLICADGQSVGMISGGCLEPHIIKKALWLTRNGPVVQVY QTGEDLTEEAAAKTQAVDDIEFSIQTELNFGLGCNGRVHVLFERLDTARAYLKMIRQVRQTQQPVTMATLIRSQEASHPV GLHVQLTSDSNAVQVASANNITADCDDLINQAIQSLSAKYVSAKHIGSGLTQKPTEQKPTDFATITSVAQQDITQPVQTQ WLVQQLQPQKRLLICGAGNDVQPLVRLAKMQDWHVTVIDSRSHYATRSRFMAADEVQCVALEDTQTLLALSQNAAVAVMS HSLTQDRARLQVLLANPPLYLGQLGPKYRTERLIDEIKQAYQGDVNGLEQGIDQLNYPIGYKLGGDGPEALALGVMAQIS AVMHGKENTLSASINAKKMKQASQPKTASDRRYKDRWAAQ >Mature_439_residues SNQISDILQLADQAIATDTEAVLATVVHIEGSAYRKPGAMMLICADGQSVGMISGGCLEPHIIKKALWLTRNGPVVQVYQ TGEDLTEEAAAKTQAVDDIEFSIQTELNFGLGCNGRVHVLFERLDTARAYLKMIRQVRQTQQPVTMATLIRSQEASHPVG LHVQLTSDSNAVQVASANNITADCDDLINQAIQSLSAKYVSAKHIGSGLTQKPTEQKPTDFATITSVAQQDITQPVQTQW LVQQLQPQKRLLICGAGNDVQPLVRLAKMQDWHVTVIDSRSHYATRSRFMAADEVQCVALEDTQTLLALSQNAAVAVMSH SLTQDRARLQVLLANPPLYLGQLGPKYRTERLIDEIKQAYQGDVNGLEQGIDQLNYPIGYKLGGDGPEALALGVMAQISA VMHGKENTLSASINAKKMKQASQPKTASDRRYKDRWAAQ
Specific function: Oxidizes hypoxanthine and xanthine to uric acid. PucA subunit could exert a molybdenum cofactor recruiting function [H]
COG id: COG1975
COG function: function code O; Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003777 [H]
Pfam domain/function: PF02625 XdhC_CoxI [H]
EC number: =1.17.1.4 [H]
Molecular weight: Translated: 48052; Mature: 47921
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNQISDILQLADQAIATDTEAVLATVVHIEGSAYRKPGAMMLICADGQSVGMISGGCLE CCCHHHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCEECCCCCC PHIIKKALWLTRNGPVVQVYQTGEDLTEEAAAKTQAVDDIEFSIQTELNFGLGCNGRVHV HHHHHHHHHEECCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEH LFERLDTARAYLKMIRQVRQTQQPVTMATLIRSQEASHPVGLHVQLTSDSNAVQVASANN HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCC ITADCDDLINQAIQSLSAKYVSAKHIGSGLTQKPTEQKPTDFATITSVAQQDITQPVQTQ CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH WLVQQLQPQKRLLICGAGNDVQPLVRLAKMQDWHVTVIDSRSHYATRSRFMAADEVQCVA HHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCEEEEE LEDTQTLLALSQNAAVAVMSHSLTQDRARLQVLLANPPLYLGQLGPKYRTERLIDEIKQA ECCCHHHHHCCCCCEEEEEHHHHHHCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHHHH YQGDVNGLEQGIDQLNYPIGYKLGGDGPEALALGVMAQISAVMHGKENTLSASINAKKMK HCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH QASQPKTASDRRYKDRWAAQ HCCCCCCCCCCHHHHHHCCC >Mature Secondary Structure SNQISDILQLADQAIATDTEAVLATVVHIEGSAYRKPGAMMLICADGQSVGMISGGCLE CCHHHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCEECCCCCC PHIIKKALWLTRNGPVVQVYQTGEDLTEEAAAKTQAVDDIEFSIQTELNFGLGCNGRVHV HHHHHHHHHEECCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEH LFERLDTARAYLKMIRQVRQTQQPVTMATLIRSQEASHPVGLHVQLTSDSNAVQVASANN HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCC ITADCDDLINQAIQSLSAKYVSAKHIGSGLTQKPTEQKPTDFATITSVAQQDITQPVQTQ CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH WLVQQLQPQKRLLICGAGNDVQPLVRLAKMQDWHVTVIDSRSHYATRSRFMAADEVQCVA HHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCEEEEE LEDTQTLLALSQNAAVAVMSHSLTQDRARLQVLLANPPLYLGQLGPKYRTERLIDEIKQA ECCCHHHHHCCCCCEEEEEHHHHHHCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHHHH YQGDVNGLEQGIDQLNYPIGYKLGGDGPEALALGVMAQISAVMHGKENTLSASINAKKMK HCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH QASQPKTASDRRYKDRWAAQ HCCCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136 [H]