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The map label for this gene is yjgF [C]

Identifier: 148652744

GI number: 148652744

Start: 1120041

End: 1120556

Strand: Direct

Name: yjgF [C]

Synonym: PsycPRwf_0937

Alternate gene names: 148652744

Gene position: 1120041-1120556 (Clockwise)

Preceding gene: 148652743

Following gene: 148652750

Centisome position: 37.6

GC content: 45.16

Gene sequence:

>516_bases
ATGTTTCAGACATCTTTAAATAAAATTGCGATTGGCTCGCTGCTGAGTATCACTCTGGTAGCCCAAGCCATGACGGTACA
AGCTGCCACTCAGGGCGTCAACCCCAGCCAAAACTCTCATCCACCCACACCCAAAGTGAATATCGTCAGCAAAACAGCGC
CTATTTTTTATGGTTCACAAGGCGCTTATCCTTTTTCTAAGGCGGTTCGGGCCGGCGATACTTTGTATCTATCAGGCGAA
CTGGGTATGAAAGACAATAAACTGGTATCAGGCGGTATTAAAGCGCAGACCGCTCAGGCCTTAGACAATATCAATCAAAC
CCTGTTAAGCTACGGTTACCAAAGCTCGGACTTGGTCAAATGTATGGTGATGCTCACTGATATTAAAGATTTTGATGCGT
TTAATGACGTGTATCAGAGCAAGCTAAGTAAACCATATCCGGTACGCTCAGCCTTTGCCGTTAAAGACTTGGCACTAGGT
GCTAAAGTTGAAATAGAGTGCATGGCCGTTAAATAG

Upstream 100 bases:

>100_bases
CTGCATAATTTATGCGGTGCTTTTTTTATGCCCATAATAGACCACAGTTTCTTTGTTTGACCTTTAACTAATAACAAACT
AAAAATAAAATAGGACGGTT

Downstream 100 bases:

>100_bases
CCAGCTTAGGTTGGGCTAGTATGGATCATAAAAAAGACGCCCTGATACAAGGCGTCTTTTGGTGTTCTGGCTTTGGACAA
TATAACGGCTGCGCAATAAC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MFQTSLNKIAIGSLLSITLVAQAMTVQAATQGVNPSQNSHPPTPKVNIVSKTAPIFYGSQGAYPFSKAVRAGDTLYLSGE
LGMKDNKLVSGGIKAQTAQALDNINQTLLSYGYQSSDLVKCMVMLTDIKDFDAFNDVYQSKLSKPYPVRSAFAVKDLALG
AKVEIECMAVK

Sequences:

>Translated_171_residues
MFQTSLNKIAIGSLLSITLVAQAMTVQAATQGVNPSQNSHPPTPKVNIVSKTAPIFYGSQGAYPFSKAVRAGDTLYLSGE
LGMKDNKLVSGGIKAQTAQALDNINQTLLSYGYQSSDLVKCMVMLTDIKDFDAFNDVYQSKLSKPYPVRSAFAVKDLALG
AKVEIECMAVK
>Mature_171_residues
MFQTSLNKIAIGSLLSITLVAQAMTVQAATQGVNPSQNSHPPTPKVNIVSKTAPIFYGSQGAYPFSKAVRAGDTLYLSGE
LGMKDNKLVSGGIKAQTAQALDNINQTLLSYGYQSSDLVKCMVMLTDIKDFDAFNDVYQSKLSKPYPVRSAFAVKDLALG
AKVEIECMAVK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=110, Percent_Identity=37.2727272727273, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71982075, Length=109, Percent_Identity=44.0366972477064, Blast_Score=90, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71982068, Length=109, Percent_Identity=44.0366972477064, Blast_Score=90, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI25148896, Length=109, Percent_Identity=44.0366972477064, Blast_Score=90, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6322138, Length=112, Percent_Identity=33.0357142857143, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320899, Length=104, Percent_Identity=33.6538461538462, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=39.2, Blast_Score=81, Evalue=3e-16,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 18331; Mature: 18331

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQTSLNKIAIGSLLSITLVAQAMTVQAATQGVNPSQNSHPPTPKVNIVSKTAPIFYGSQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECCC
GAYPFSKAVRAGDTLYLSGELGMKDNKLVSGGIKAQTAQALDNINQTLLSYGYQSSDLVK
CCCCHHHHHHCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
CMVMLTDIKDFDAFNDVYQSKLSKPYPVRSAFAVKDLALGAKVEIECMAVK
HHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEEEEC
>Mature Secondary Structure
MFQTSLNKIAIGSLLSITLVAQAMTVQAATQGVNPSQNSHPPTPKVNIVSKTAPIFYGSQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECCC
GAYPFSKAVRAGDTLYLSGELGMKDNKLVSGGIKAQTAQALDNINQTLLSYGYQSSDLVK
CCCCHHHHHHCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
CMVMLTDIKDFDAFNDVYQSKLSKPYPVRSAFAVKDLALGAKVEIECMAVK
HHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]