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The map label for this gene is ccmF [H]

Identifier: 148652611

GI number: 148652611

Start: 955013

End: 956962

Strand: Direct

Name: ccmF [H]

Synonym: PsycPRwf_0802

Alternate gene names: 148652611

Gene position: 955013-956962 (Clockwise)

Preceding gene: 148652610

Following gene: 148652612

Centisome position: 32.06

GC content: 48.51

Gene sequence:

>1950_bases
ATGGTAATTACTGAGCTAGGGTATTTTGCTTTAGTGGCATCAATGGTATTGGCGTTACTGCAAGTGGTGCTACCAACTTT
TGGCATTGTCCGGCAGCAGCCTCATTTGCAGCGTTTGGCTCCAAGCTTAGCTTGGGCACAGTTCGTGGCAGTAGGATTGT
CCTTTTTGGCACTGATGGCTGGGTTTTATTATAACGACTTTACTTTAGTGTATGTCGCCCAGCACTCCAACTCTTTGCTG
CCTTGGTACTATAAGCTATCTGCCACTTGGGGTGGTCACGAAGGGTCTTTACTATTGTGGGTAACCATTTTGGCTGGCTG
GTCATCCATGGTGGCGTGGTTTAGCCGCGGCTTACCACTCAATATGCGTGCTCGCGTTTTAGTCATCTTAGCGGCTGTAC
AGTTGATGATGTTGGCCATGCTGATTTTTACCTCATCACCTTTTGATCGCACCTTACCCAATGTCCCTGTGGATGGGGCG
GATCTAACCCCCTTACTACAAGACCCCGGCTTAATTTTCCATCCACCTATGCTATATATGGGCTATGTGGGAATGGCAGT
GCCGTTTGCATTTTGTATGGCGGCGCTTTGGGCCGGTCGTTTGGATGCGGTATGGACGCGTTGGTCTCGCCCGTGGGCGC
TAGCGGCATGGGGCTTTTTGACCTTGGGTATCGCTTTGGGCTCTTGGTGGGCTTATTATGAGCTTGGTTGGGGCGGTTGG
TGGTTCTGGGATCCGGTTGAGAATGCATCCTTGATGCCTTGGCTGGCATGTACGGCCTTAATTCACTCGTTGGCGGTAAC
TGAAAAGCGTGGGGTGTTTAAAGCGTGGACCATTATGCTGTCTATCTTCGCCTTTGCGCTAAGCTTACTGGGAACCTTCT
TGGTGCGCTCAGGGGTGATTACCTCTGTGCATTCTTTTGCTGCTGATCCCACGCGTGGTTTGGCCATTTTAGCCATCTTA
GGGGTGGTGATTGGCTCAGGGTTATTTGTGTTCGCTGTGCGCGGATGGCGCTTGACCGTTGAGAGTCATTATGGTCTAAA
ATCACGTGAGACCTTATTAGTAATCAACAACATAGTAATATTAGTGGCCACCTTAGTGGTTCTACTAGGAACCTTGTATC
CCATCATTGCTGACTCCTTTAATTTGGGTCAGGTATCGGTGGGCCCTCCTTACTTTAACGCCTTGTTCGTGCCTTTGGCG
TGGCTGATTTTATTGACTATGGGTATGGGCTCAAACTTGCGCTGGAAGCAAGACAAACGCCCGCTGCTGGGTGCTGCCAC
CACCATTTTGGTAAGCAGTGCATTGTTAGCCGGTATTATTACCTACCTCATTACCAAAAGTCTTAATGTCCAAATTATTA
TCACCGGTTTATTGTGTTTGTGGGTGCTGGGCTGGATGTTGTATGACATCAAAGAAAAAACCCGCAATGCACCAAGCCTT
GGGCGAGGTCTAAAGCGTTTAAAAGCTCATTATTGGGGCATGCAAATTGCGCATGTGGGCGTATTGATTGTCGCTTTGGG
TATTGGTGTGACCACCGCGCTGAGTGTCGAAAAAGATGTGGCAATGACGGTGGGCGATACTGTGGATGTCAATGATTACC
ACTTTACTTTAGTTGACTTTGAACAAGTGCGCGGCAAAAACTATGATGCCACTCAAGCGGAGATTAAGGTCGAAAAAGAC
GGTAAGTTTGTGACCACGTTATACCCACAAAAACGTGATTATGTGGTCAGTAGCATGCCTATGACCGAAGCGGGTATCCA
AACCACTATGCTACGAGATGTCTATGTGGCCCTAGGCGAGCCGATTAATGTCAATGAGCCTGAGGGTAATTGGGCAGTGC
GTGTGTATGTTAAGCCCATGATTGCATGGCTATGGCTTGGTGCCATAGTGATGGCGTTAGGCGGCATTATCAGTATGCTA
GATCGCCGTTATCGCCTAAAAAAATCTTAA

Upstream 100 bases:

>100_bases
TTTAAAGTTTCATGAGTATTCACACGCTTATTTTGATGGGGCAAAACCTGCCTCATGATGATAAATAAGCAACAGCGTAG
TAGTTTTAGGGCGAGCGAAT

Downstream 100 bases:

>100_bases
TTAAGATTGGTTAGGCGTAGTCAGTCGTATACGTTAAGCTAGGTTCATAACTTGTTATTTAAGGAAGCTATAAATGTCTG
ATCCGGTCATGAAGAAGTCA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MVITELGYFALVASMVLALLQVVLPTFGIVRQQPHLQRLAPSLAWAQFVAVGLSFLALMAGFYYNDFTLVYVAQHSNSLL
PWYYKLSATWGGHEGSLLLWVTILAGWSSMVAWFSRGLPLNMRARVLVILAAVQLMMLAMLIFTSSPFDRTLPNVPVDGA
DLTPLLQDPGLIFHPPMLYMGYVGMAVPFAFCMAALWAGRLDAVWTRWSRPWALAAWGFLTLGIALGSWWAYYELGWGGW
WFWDPVENASLMPWLACTALIHSLAVTEKRGVFKAWTIMLSIFAFALSLLGTFLVRSGVITSVHSFAADPTRGLAILAIL
GVVIGSGLFVFAVRGWRLTVESHYGLKSRETLLVINNIVILVATLVVLLGTLYPIIADSFNLGQVSVGPPYFNALFVPLA
WLILLTMGMGSNLRWKQDKRPLLGAATTILVSSALLAGIITYLITKSLNVQIIITGLLCLWVLGWMLYDIKEKTRNAPSL
GRGLKRLKAHYWGMQIAHVGVLIVALGIGVTTALSVEKDVAMTVGDTVDVNDYHFTLVDFEQVRGKNYDATQAEIKVEKD
GKFVTTLYPQKRDYVVSSMPMTEAGIQTTMLRDVYVALGEPINVNEPEGNWAVRVYVKPMIAWLWLGAIVMALGGIISML
DRRYRLKKS

Sequences:

>Translated_649_residues
MVITELGYFALVASMVLALLQVVLPTFGIVRQQPHLQRLAPSLAWAQFVAVGLSFLALMAGFYYNDFTLVYVAQHSNSLL
PWYYKLSATWGGHEGSLLLWVTILAGWSSMVAWFSRGLPLNMRARVLVILAAVQLMMLAMLIFTSSPFDRTLPNVPVDGA
DLTPLLQDPGLIFHPPMLYMGYVGMAVPFAFCMAALWAGRLDAVWTRWSRPWALAAWGFLTLGIALGSWWAYYELGWGGW
WFWDPVENASLMPWLACTALIHSLAVTEKRGVFKAWTIMLSIFAFALSLLGTFLVRSGVITSVHSFAADPTRGLAILAIL
GVVIGSGLFVFAVRGWRLTVESHYGLKSRETLLVINNIVILVATLVVLLGTLYPIIADSFNLGQVSVGPPYFNALFVPLA
WLILLTMGMGSNLRWKQDKRPLLGAATTILVSSALLAGIITYLITKSLNVQIIITGLLCLWVLGWMLYDIKEKTRNAPSL
GRGLKRLKAHYWGMQIAHVGVLIVALGIGVTTALSVEKDVAMTVGDTVDVNDYHFTLVDFEQVRGKNYDATQAEIKVEKD
GKFVTTLYPQKRDYVVSSMPMTEAGIQTTMLRDVYVALGEPINVNEPEGNWAVRVYVKPMIAWLWLGAIVMALGGIISML
DRRYRLKKS
>Mature_649_residues
MVITELGYFALVASMVLALLQVVLPTFGIVRQQPHLQRLAPSLAWAQFVAVGLSFLALMAGFYYNDFTLVYVAQHSNSLL
PWYYKLSATWGGHEGSLLLWVTILAGWSSMVAWFSRGLPLNMRARVLVILAAVQLMMLAMLIFTSSPFDRTLPNVPVDGA
DLTPLLQDPGLIFHPPMLYMGYVGMAVPFAFCMAALWAGRLDAVWTRWSRPWALAAWGFLTLGIALGSWWAYYELGWGGW
WFWDPVENASLMPWLACTALIHSLAVTEKRGVFKAWTIMLSIFAFALSLLGTFLVRSGVITSVHSFAADPTRGLAILAIL
GVVIGSGLFVFAVRGWRLTVESHYGLKSRETLLVINNIVILVATLVVLLGTLYPIIADSFNLGQVSVGPPYFNALFVPLA
WLILLTMGMGSNLRWKQDKRPLLGAATTILVSSALLAGIITYLITKSLNVQIIITGLLCLWVLGWMLYDIKEKTRNAPSL
GRGLKRLKAHYWGMQIAHVGVLIVALGIGVTTALSVEKDVAMTVGDTVDVNDYHFTLVDFEQVRGKNYDATQAEIKVEKD
GKFVTTLYPQKRDYVVSSMPMTEAGIQTTMLRDVYVALGEPINVNEPEGNWAVRVYVKPMIAWLWLGAIVMALGGIISML
DRRYRLKKS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=649, Percent_Identity=48.382126348228, Blast_Score=580, Evalue=1e-166,
Organism=Escherichia coli, GI1790511, Length=396, Percent_Identity=43.9393939393939, Blast_Score=295, Evalue=5e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71879; Mature: 71879

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVITELGYFALVASMVLALLQVVLPTFGIVRQQPHLQRLAPSLAWAQFVAVGLSFLALMA
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GFYYNDFTLVYVAQHSNSLLPWYYKLSATWGGHEGSLLLWVTILAGWSSMVAWFSRGLPL
HHHCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
NMRARVLVILAAVQLMMLAMLIFTSSPFDRTLPNVPVDGADLTPLLQDPGLIFHPPMLYM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHCCCCCEECCHHHHH
GYVGMAVPFAFCMAALWAGRLDAVWTRWSRPWALAAWGFLTLGIALGSWWAYYELGWGGW
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCE
WFWDPVENASLMPWLACTALIHSLAVTEKRGVFKAWTIMLSIFAFALSLLGTFLVRSGVI
EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSVHSFAADPTRGLAILAILGVVIGSGLFVFAVRGWRLTVESHYGLKSRETLLVINNIVI
HHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECEEEEEECCCCCCCCCEEEEHHHHHH
LVATLVVLLGTLYPIIADSFNLGQVSVGPPYFNALFVPLAWLILLTMGMGSNLRWKQDKR
HHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PLLGAATTILVSSALLAGIITYLITKSLNVQIIITGLLCLWVLGWMLYDIKEKTRNAPSL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
GRGLKRLKAHYWGMQIAHVGVLIVALGIGVTTALSVEKDVAMTVGDTVDVNDYHFTLVDF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCHHEEECCEEECCCEEEEEEEH
EQVRGKNYDATQAEIKVEKDGKFVTTLYPQKRDYVVSSMPMTEAGIQTTMLRDVYVALGE
HHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCC
PINVNEPEGNWAVRVYVKPMIAWLWLGAIVMALGGIISMLDRRYRLKKS
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVITELGYFALVASMVLALLQVVLPTFGIVRQQPHLQRLAPSLAWAQFVAVGLSFLALMA
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GFYYNDFTLVYVAQHSNSLLPWYYKLSATWGGHEGSLLLWVTILAGWSSMVAWFSRGLPL
HHHCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
NMRARVLVILAAVQLMMLAMLIFTSSPFDRTLPNVPVDGADLTPLLQDPGLIFHPPMLYM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHCCCCCEECCHHHHH
GYVGMAVPFAFCMAALWAGRLDAVWTRWSRPWALAAWGFLTLGIALGSWWAYYELGWGGW
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCE
WFWDPVENASLMPWLACTALIHSLAVTEKRGVFKAWTIMLSIFAFALSLLGTFLVRSGVI
EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSVHSFAADPTRGLAILAILGVVIGSGLFVFAVRGWRLTVESHYGLKSRETLLVINNIVI
HHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECEEEEEECCCCCCCCCEEEEHHHHHH
LVATLVVLLGTLYPIIADSFNLGQVSVGPPYFNALFVPLAWLILLTMGMGSNLRWKQDKR
HHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PLLGAATTILVSSALLAGIITYLITKSLNVQIIITGLLCLWVLGWMLYDIKEKTRNAPSL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
GRGLKRLKAHYWGMQIAHVGVLIVALGIGVTTALSVEKDVAMTVGDTVDVNDYHFTLVDF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCHHEEECCEEECCCEEEEEEEH
EQVRGKNYDATQAEIKVEKDGKFVTTLYPQKRDYVVSSMPMTEAGIQTTMLRDVYVALGE
HHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCC
PINVNEPEGNWAVRVYVKPMIAWLWLGAIVMALGGIISMLDRRYRLKKS
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]