| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is yggG [H]
Identifier: 148652360
GI number: 148652360
Start: 654873
End: 655679
Strand: Direct
Name: yggG [H]
Synonym: PsycPRwf_0548
Alternate gene names: 148652360
Gene position: 654873-655679 (Clockwise)
Preceding gene: 148652359
Following gene: 148652362
Centisome position: 21.98
GC content: 47.58
Gene sequence:
>807_bases ATGGCTGTATTTGGCAAACTGAAAATCTCTATCTTAACCGCAACTATGACCACTCTGGTGGGCTGTGCAACCGTCGCTGA TGTAGCCGGATATAACACGGCAGCACTCAACGAGGATGCAGCAAAAAGCTACAGTCAAGTAGTCTCTAAAGCAAGCAGTC AAGGGGCAGTGGATAGAACGTCGAGCACAGCCGTGCGAGTTAATAGGGTCTTTAACCGCTTAAGACCTTATGCAGATCGT GCCAATGCCACAGGTGTTCCTTTTGACTGGCAACTGACAGTCATTCGCTCACCTGAGCTCAATGCTTGGGCAATGCCAGG CGGTAAGATGGTGGTGTATACCGGTATTGTAGAAAAGCTTAATCTCAATGATGCAGAGATTGCGGCCATTATTGGTCACG AGATGACGCATGCCTTACAAGAGCACAGCAAAAAAGATGCAGGGCAAAAGATTTTAACCGGATTGGCATTGCAATTAGGG GGTGCAGCGATACAGTCTAAGACCGGATTAAGCGCAGACTCTATCGGTATGCTCAGTGATTTAGGTATCGACAAGCCATT TTCTCGCAGTCAAGAGTCACAAGCTGATGCCGGCGGCCTGCATCTAATGGCTCAAGCGGGCTATAACCCAGAGGCAGCCA TCTCTGTGTGGAAAAAAATGGAGGCGGTAAATGGTCGCAGCAATGCGGTTGTTACCTTAATGTCTACTCACCCAAACTCT CAGCAGCGTATCAATAAAATACAAGCACTATTGCCTGAAGTGACACCAATTTATCAAGCCGCTGCTAAAGCCCCTAATGG AAAATAA
Upstream 100 bases:
>100_bases CATCAACGTTGACTCCTCGGTTTTAAATTTCTTTAAAACCGCTAGTTTTGTAAGGGCCTAGATATTTTCCCCAATAACTT CTTTTTTATAAGGATATTTT
Downstream 100 bases:
>100_bases GCAATTTCGGCTCATCGCTATTTAGTCTATAAGTAGGCCGTGCACCAGCTTATAGGTTCATCAAGGCGCTTAATTTGAAG GATGATACTTCTTATTAAGC
Product: peptidase M48, Ste24p
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MAVFGKLKISILTATMTTLVGCATVADVAGYNTAALNEDAAKSYSQVVSKASSQGAVDRTSSTAVRVNRVFNRLRPYADR ANATGVPFDWQLTVIRSPELNAWAMPGGKMVVYTGIVEKLNLNDAEIAAIIGHEMTHALQEHSKKDAGQKILTGLALQLG GAAIQSKTGLSADSIGMLSDLGIDKPFSRSQESQADAGGLHLMAQAGYNPEAAISVWKKMEAVNGRSNAVVTLMSTHPNS QQRINKIQALLPEVTPIYQAAAKAPNGK
Sequences:
>Translated_268_residues MAVFGKLKISILTATMTTLVGCATVADVAGYNTAALNEDAAKSYSQVVSKASSQGAVDRTSSTAVRVNRVFNRLRPYADR ANATGVPFDWQLTVIRSPELNAWAMPGGKMVVYTGIVEKLNLNDAEIAAIIGHEMTHALQEHSKKDAGQKILTGLALQLG GAAIQSKTGLSADSIGMLSDLGIDKPFSRSQESQADAGGLHLMAQAGYNPEAAISVWKKMEAVNGRSNAVVTLMSTHPNS QQRINKIQALLPEVTPIYQAAAKAPNGK >Mature_267_residues AVFGKLKISILTATMTTLVGCATVADVAGYNTAALNEDAAKSYSQVVSKASSQGAVDRTSSTAVRVNRVFNRLRPYADRA NATGVPFDWQLTVIRSPELNAWAMPGGKMVVYTGIVEKLNLNDAEIAAIIGHEMTHALQEHSKKDAGQKILTGLALQLGG AAIQSKTGLSADSIGMLSDLGIDKPFSRSQESQADAGGLHLMAQAGYNPEAAISVWKKMEAVNGRSNAVVTLMSTHPNSQ QRINKIQALLPEVTPIYQAAAKAPNGK
Specific function: Seems to regulate the expression of speB [H]
COG id: COG0501
COG function: function code O; Zn-dependent protease with chaperone function
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M48B family [H]
Homologues:
Organism=Homo sapiens, GI21686999, Length=188, Percent_Identity=27.1276595744681, Blast_Score=81, Evalue=1e-15, Organism=Escherichia coli, GI87082185, Length=170, Percent_Identity=30, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI87081800, Length=259, Percent_Identity=25.4826254826255, Blast_Score=72, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322940, Length=210, Percent_Identity=28.0952380952381, Blast_Score=92, Evalue=6e-20,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001915 [H]
Pfam domain/function: PF01435 Peptidase_M48 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 28334; Mature: 28202
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVFGKLKISILTATMTTLVGCATVADVAGYNTAALNEDAAKSYSQVVSKASSQGAVDRT CCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCC SSTAVRVNRVFNRLRPYADRANATGVPFDWQLTVIRSPELNAWAMPGGKMVVYTGIVEKL CHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEEECCCCCEEECCCCCEEEEECCHHHC NLNDAEIAAIIGHEMTHALQEHSKKDAGQKILTGLALQLGGAAIQSKTGLSADSIGMLSD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHCCHHHH LGIDKPFSRSQESQADAGGLHLMAQAGYNPEAAISVWKKMEAVNGRSNAVVTLMSTHPNS CCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH QQRINKIQALLPEVTPIYQAAAKAPNGK HHHHHHHHHHHCCHHHHHHHHHCCCCCC >Mature Secondary Structure AVFGKLKISILTATMTTLVGCATVADVAGYNTAALNEDAAKSYSQVVSKASSQGAVDRT CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCC SSTAVRVNRVFNRLRPYADRANATGVPFDWQLTVIRSPELNAWAMPGGKMVVYTGIVEKL CHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEEECCCCCEEECCCCCEEEEECCHHHC NLNDAEIAAIIGHEMTHALQEHSKKDAGQKILTGLALQLGGAAIQSKTGLSADSIGMLSD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHCCHHHH LGIDKPFSRSQESQADAGGLHLMAQAGYNPEAAISVWKKMEAVNGRSNAVVTLMSTHPNS CCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH QQRINKIQALLPEVTPIYQAAAKAPNGK HHHHHHHHHHHCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2153656; 9278503; 1310091 [H]