| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is 148643792
Identifier: 148643792
GI number: 148643792
Start: 1781522
End: 1782223
Strand: Reverse
Name: 148643792
Synonym: Msm_1732
Alternate gene names: NA
Gene position: 1782223-1781522 (Counterclockwise)
Preceding gene: 148643794
Following gene: 148643791
Centisome position: 96.17
GC content: 33.05
Gene sequence:
>702_bases ATGAGCAAATATTGTCCGAAATGTGGAAATGAACTGCCTGATGATGCACAATTTTGTAATGAATGCGGATATTCTGTTTT AGTTGACAATAATCATACAGATGAAGAAACTCCCAAAGAAGTTATGAAAACTGAAGAAGCTGAAACTCCTAAAAAAGATG CAGATGAAATATTATTTAATGAAGCTCCAGATAAAACTAAATCAAATAATGATATGGATTCTAAAATATTTAGCGACAAA GCTTCATTTAACCTTCCTAAAAACAAAATATTAATTCCTGTTGCAGTTATAGTTATTATAATTATAGGACTGGCTATTTT CAGCAGCAATATATTTTACAATCCCGACAGCATCTCAATAACCATTACTGATATTTCAGCAACCGGTGAGGAAAGCGATT ATTATTACAATGTAAATGCTATATTTAGCAATCTTCCGTCAAATACCCAGGGTTACCTTCTGAAAACAACATATTATGAC AGTAATGGAAATGCATTAGCTTCTACAACTGAAGGGTTAAATACTGTAGACAACAGCGAATACGGTTCCTGTTTTGCATT TTACAACAGTCCCAAATATTTAGCAATAGATCATGTCAAAGTTGAAATCATACATGACGGCAATGCCATAAAAGAAGCTA CAGGTGATTTTGACCGAAACAAAGCAGATTTCTCAAATGACAACAACACCACACAGTCTTAA
Upstream 100 bases:
>100_bases AATAATAAATAAATTTTTCGAAAAATTTTAAAAACAAATATCAATAACAAATTATATACATATTAATACAGATTCAATTT ATAATAGAGGTGAAAACAAA
Downstream 100 bases:
>100_bases TAGAAATCTTTTAATTTACTTTTTTATAAAATTGTTCTACTTTTTTTAAACATATGTTTAAATTTTATCCTATAAAATTA AATAAGACACATAATCCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MSKYCPKCGNELPDDAQFCNECGYSVLVDNNHTDEETPKEVMKTEEAETPKKDADEILFNEAPDKTKSNNDMDSKIFSDK ASFNLPKNKILIPVAVIVIIIIGLAIFSSNIFYNPDSISITITDISATGEESDYYYNVNAIFSNLPSNTQGYLLKTTYYD SNGNALASTTEGLNTVDNSEYGSCFAFYNSPKYLAIDHVKVEIIHDGNAIKEATGDFDRNKADFSNDNNTTQS
Sequences:
>Translated_233_residues MSKYCPKCGNELPDDAQFCNECGYSVLVDNNHTDEETPKEVMKTEEAETPKKDADEILFNEAPDKTKSNNDMDSKIFSDK ASFNLPKNKILIPVAVIVIIIIGLAIFSSNIFYNPDSISITITDISATGEESDYYYNVNAIFSNLPSNTQGYLLKTTYYD SNGNALASTTEGLNTVDNSEYGSCFAFYNSPKYLAIDHVKVEIIHDGNAIKEATGDFDRNKADFSNDNNTTQS >Mature_232_residues SKYCPKCGNELPDDAQFCNECGYSVLVDNNHTDEETPKEVMKTEEAETPKKDADEILFNEAPDKTKSNNDMDSKIFSDKA SFNLPKNKILIPVAVIVIIIIGLAIFSSNIFYNPDSISITITDISATGEESDYYYNVNAIFSNLPSNTQGYLLKTTYYDS NGNALASTTEGLNTVDNSEYGSCFAFYNSPKYLAIDHVKVEIIHDGNAIKEATGDFDRNKADFSNDNNTTQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25809; Mature: 25678
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKYCPKCGNELPDDAQFCNECGYSVLVDNNHTDEETPKEVMKTEEAETPKKDADEILFN CCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHC EAPDKTKSNNDMDSKIFSDKASFNLPKNKILIPVAVIVIIIIGLAIFSSNIFYNPDSISI CCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEECCCCEEE TITDISATGEESDYYYNVNAIFSNLPSNTQGYLLKTTYYDSNGNALASTTEGLNTVDNSE EEEEEECCCCCCCEEEEHHHHHHCCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCC YGSCFAFYNSPKYLAIDHVKVEIIHDGNAIKEATGDFDRNKADFSNDNNTTQS CCCEEEEECCCCEEEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SKYCPKCGNELPDDAQFCNECGYSVLVDNNHTDEETPKEVMKTEEAETPKKDADEILFN CCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHC EAPDKTKSNNDMDSKIFSDKASFNLPKNKILIPVAVIVIIIIGLAIFSSNIFYNPDSISI CCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEECCCCEEE TITDISATGEESDYYYNVNAIFSNLPSNTQGYLLKTTYYDSNGNALASTTEGLNTVDNSE EEEEEECCCCCCCEEEEHHHHHHCCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCC YGSCFAFYNSPKYLAIDHVKVEIIHDGNAIKEATGDFDRNKADFSNDNNTTQS CCCEEEEECCCCEEEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA