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The map label for this gene is yibD [H]

Identifier: 148643563

GI number: 148643563

Start: 1529337

End: 1530440

Strand: Reverse

Name: yibD [H]

Synonym: Msm_1503

Alternate gene names: 148643563

Gene position: 1530440-1529337 (Counterclockwise)

Preceding gene: 148643564

Following gene: 148643562

Centisome position: 82.59

GC content: 33.88

Gene sequence:

>1104_bases
ATGGAAGATAAAATAAGTATTATTCTACCTATTTTTAATGTCGGCCCTCATTTAAGAGGAGGAATTGATTCTTTAATCAA
CCAAACAATAGGAAATGAAAATTTAGAAATCATTATGGTAGACGACTGTTCTACTGATGAAAGTGGAAAGATTATTGATG
AATATGATGAGAAATACGACTGCTGCAAAGCCATCCACCTGGAAAAAAATACCGGTGCAGCCAATGGTCCCCGTAACAGA
GGTATTGAAGAGTGCAGCGGCGATTACATTATGTTTTTAGATCCAGATGACAGATACACATTAGATGCCTGTGAAGTATT
ATACAATGCAGTAACCAAGTATGATGCAGATATGGCTTTTGGAAGATTCAGAAGAATCTATACTTATGGTGAAACTATTC
AAAAATCATATTCCCCTTATTTGGATGATTTAAAAAGTGCATATCCTGATGAAACATTTGAAACAGCAAATCCTTTAAAT
GTTCCTGATTATGTTTGGGACCACATTCTGGAACATGCACTATACGGTAAAAAGATTCAGGGAAAATATGAAAGAAACAG
TCCCGTTGATGTTATCCATGTCAAAAGCATAAAGGAAGAACCTGATTTATTGAAAATGGCGCCTTCTGTATGGAGTAAAA
TATTTAAAAGAGAACTAATTATGGATAAAAATATCCGTTATCAGCCATTTGTTTCCGGGGACGATTTAGCATTTACCTTA
GAAACTCTCCTTAAAGCTGACGGAATTGTATATTTGAATAATTTCATGTGCTATGACTATTATGTACGTGATTTGCCTGA
TGACAAGTCCATTACCAATAATGTAAATGTCAGATTCCTCAGTGATTTAATGGACTCCTATATTTATGCCAGACAGTGTA
CTGAAAGGTTTTCCAAAGATATTCAAACAATTTCAGTTAACCCTCACTTAATTTACTGGATGCATACATGGAAAAATTCA
CCGTTTACCAAAAGTGAAAACAAATTACTGTTAAGCAAAGTGGAAAAACTTAAAAGGATTCATAAAAGCGATCTGAAAAC
CAAAATGTTATTATCTTCCATGACAACAGCTATTGAATCTGCAATTAAAATACACAAGGAGTAA

Upstream 100 bases:

>100_bases
GGTAAAATTTTAGACCAGTACAATATTAATTATATATATCCTGATACTTACACTGTTCGTGATATGATGGAGTTATTATT
CAAAACCTGGAGAAATTCAC

Downstream 100 bases:

>100_bases
ATATTAATGAAATATGTAATTGTTGGAGCTGGCCTTTCCGGTTTAACAATCGCTGAAAGAATAGCTAACCAGCTTAATGA
AGAAGTTCTGATTATTGAAA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MEDKISIILPIFNVGPHLRGGIDSLINQTIGNENLEIIMVDDCSTDESGKIIDEYDEKYDCCKAIHLEKNTGAANGPRNR
GIEECSGDYIMFLDPDDRYTLDACEVLYNAVTKYDADMAFGRFRRIYTYGETIQKSYSPYLDDLKSAYPDETFETANPLN
VPDYVWDHILEHALYGKKIQGKYERNSPVDVIHVKSIKEEPDLLKMAPSVWSKIFKRELIMDKNIRYQPFVSGDDLAFTL
ETLLKADGIVYLNNFMCYDYYVRDLPDDKSITNNVNVRFLSDLMDSYIYARQCTERFSKDIQTISVNPHLIYWMHTWKNS
PFTKSENKLLLSKVEKLKRIHKSDLKTKMLLSSMTTAIESAIKIHKE

Sequences:

>Translated_367_residues
MEDKISIILPIFNVGPHLRGGIDSLINQTIGNENLEIIMVDDCSTDESGKIIDEYDEKYDCCKAIHLEKNTGAANGPRNR
GIEECSGDYIMFLDPDDRYTLDACEVLYNAVTKYDADMAFGRFRRIYTYGETIQKSYSPYLDDLKSAYPDETFETANPLN
VPDYVWDHILEHALYGKKIQGKYERNSPVDVIHVKSIKEEPDLLKMAPSVWSKIFKRELIMDKNIRYQPFVSGDDLAFTL
ETLLKADGIVYLNNFMCYDYYVRDLPDDKSITNNVNVRFLSDLMDSYIYARQCTERFSKDIQTISVNPHLIYWMHTWKNS
PFTKSENKLLLSKVEKLKRIHKSDLKTKMLLSSMTTAIESAIKIHKE
>Mature_367_residues
MEDKISIILPIFNVGPHLRGGIDSLINQTIGNENLEIIMVDDCSTDESGKIIDEYDEKYDCCKAIHLEKNTGAANGPRNR
GIEECSGDYIMFLDPDDRYTLDACEVLYNAVTKYDADMAFGRFRRIYTYGETIQKSYSPYLDDLKSAYPDETFETANPLN
VPDYVWDHILEHALYGKKIQGKYERNSPVDVIHVKSIKEEPDLLKMAPSVWSKIFKRELIMDKNIRYQPFVSGDDLAFTL
ETLLKADGIVYLNNFMCYDYYVRDLPDDKSITNNVNVRFLSDLMDSYIYARQCTERFSKDIQTISVNPHLIYWMHTWKNS
PFTKSENKLLLSKVEKLKRIHKSDLKTKMLLSSMTTAIESAIKIHKE

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=266, Percent_Identity=27.8195488721804, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 42486; Mature: 42486

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKISIILPIFNVGPHLRGGIDSLINQTIGNENLEIIMVDDCSTDESGKIIDEYDEKYD
CCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
CCKAIHLEKNTGAANGPRNRGIEECSGDYIMFLDPDDRYTLDACEVLYNAVTKYDADMAF
HHHHHEEECCCCCCCCCCCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHH
GRFRRIYTYGETIQKSYSPYLDDLKSAYPDETFETANPLNVPDYVWDHILEHALYGKKIQ
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
GKYERNSPVDVIHVKSIKEEPDLLKMAPSVWSKIFKRELIMDKNIRYQPFVSGDDLAFTL
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
ETLLKADGIVYLNNFMCYDYYVRDLPDDKSITNNVNVRFLSDLMDSYIYARQCTERFSKD
HHHHHCCCEEEEECEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
IQTISVNPHLIYWMHTWKNSPFTKSENKLLLSKVEKLKRIHKSDLKTKMLLSSMTTAIES
CEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIKIHKE
HHHHCCC
>Mature Secondary Structure
MEDKISIILPIFNVGPHLRGGIDSLINQTIGNENLEIIMVDDCSTDESGKIIDEYDEKYD
CCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
CCKAIHLEKNTGAANGPRNRGIEECSGDYIMFLDPDDRYTLDACEVLYNAVTKYDADMAF
HHHHHEEECCCCCCCCCCCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHH
GRFRRIYTYGETIQKSYSPYLDDLKSAYPDETFETANPLNVPDYVWDHILEHALYGKKIQ
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
GKYERNSPVDVIHVKSIKEEPDLLKMAPSVWSKIFKRELIMDKNIRYQPFVSGDDLAFTL
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
ETLLKADGIVYLNNFMCYDYYVRDLPDDKSITNNVNVRFLSDLMDSYIYARQCTERFSKD
HHHHHCCCEEEEECEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
IQTISVNPHLIYWMHTWKNSPFTKSENKLLLSKVEKLKRIHKSDLKTKMLLSSMTTAIES
CEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIKIHKE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]