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The map label for this gene is srp19

Identifier: 148643561

GI number: 148643561

Start: 1527948

End: 1528217

Strand: Reverse

Name: srp19

Synonym: Msm_1501

Alternate gene names: 148643561

Gene position: 1528217-1527948 (Counterclockwise)

Preceding gene: 148643562

Following gene: 148643560

Centisome position: 82.47

GC content: 31.85

Gene sequence:

>270_bases
ATGATTACAGTATGGCCACAGTACTTGGATAAAAACCTCTCTTTAAATGAGGGCAGAAAGGTATCAAAAGAAATAGCTGT
AGAAGAACCAAAATTACAGGATATTGAAAAAGCTCTAAAAAGACTTAATTTACCTTACAGCACTCAAAAAGAAAGGTCAT
ATCCTGGCAAATGGTATGAAAAATCAGGACGTATCTTAGTTGAAAGTGACAAACCTAAATTAGAGCTTTTAAAGGAAATT
AGTTTAAAACTACAGGAAATAAAACAATGA

Upstream 100 bases:

>100_bases
TCAATACAAATACTACAATATGGATTTAGTTGTTAAAAACGCTTTAGAAATATTTGAAACACAAATAAAAAAGAATCATT
AAATTTGAAGGTGAATTAAT

Downstream 100 bases:

>100_bases
TGGAAATACCATGCGGAATGCAGGAGCAGTTTCTTGAAGCCAAAGAGTTAATTGAATCCAGCAATGACATTAAAATTTAT
ACACACACTGACTGCGACGG

Product: signal recognition particle, subunit SRP19

Products: NA

Alternate protein names: SRP19

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MITVWPQYLDKNLSLNEGRKVSKEIAVEEPKLQDIEKALKRLNLPYSTQKERSYPGKWYEKSGRILVESDKPKLELLKEI
SLKLQEIKQ

Sequences:

>Translated_89_residues
MITVWPQYLDKNLSLNEGRKVSKEIAVEEPKLQDIEKALKRLNLPYSTQKERSYPGKWYEKSGRILVESDKPKLELLKEI
SLKLQEIKQ
>Mature_89_residues
MITVWPQYLDKNLSLNEGRKVSKEIAVEEPKLQDIEKALKRLNLPYSTQKERSYPGKWYEKSGRILVESDKPKLELLKEI
SLKLQEIKQ

Specific function: Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP

COG id: COG1400

COG function: function code U; Signal recognition particle 19 kDa protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SRP19 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SRP19_METS3 (A5UNC8)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001274074.1
- ProteinModelPortal:   A5UNC8
- SMR:   A5UNC8
- STRING:   A5UNC8
- GeneID:   5217164
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_1501
- eggNOG:   arNOG12644
- HOGENOM:   HBG629394
- OMA:   IWPAYID
- ProtClustDB:   CLSK2791298
- HAMAP:   MF_00305
- InterPro:   IPR002778
- InterPro:   IPR022938
- Gene3D:   G3DSA:3.30.56.30
- PANTHER:   PTHR17453

Pfam domain/function: PF01922 SRP19; SSF69695 Signal_recog_particle_SRP19

EC number: NA

Molecular weight: Translated: 10499; Mature: 10499

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVWPQYLDKNLSLNEGRKVSKEIAVEEPKLQDIEKALKRLNLPYSTQKERSYPGKWYE
CCCCCHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
KSGRILVESDKPKLELLKEISLKLQEIKQ
CCCCEEEECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MITVWPQYLDKNLSLNEGRKVSKEIAVEEPKLQDIEKALKRLNLPYSTQKERSYPGKWYE
CCCCCHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
KSGRILVESDKPKLELLKEISLKLQEIKQ
CCCCEEEECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA