| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is yfiQ [C]
Identifier: 148643531
GI number: 148643531
Start: 1495093
End: 1497189
Strand: Reverse
Name: yfiQ [C]
Synonym: Msm_1471
Alternate gene names: 148643531
Gene position: 1497189-1495093 (Counterclockwise)
Preceding gene: 148643534
Following gene: 148643530
Centisome position: 80.79
GC content: 36.86
Gene sequence:
>2097_bases ATGAAAGATCTCAATAAAATGTTTAAACCTGATTCAGTTGCTGTAATCGGAGCTTCAAACACCCCAGGTAAAGTAGGTTA TATTATCATAGATAATATCATCTCTGGAGGATATAAAGGAAAAGTATACCCAATTAACCCAAAAAGCGGAGAAATCCAAG GGTTAAAAGCATATGAAAATATTAAAGATGTTCCTGAAAAGGTGGACTTAGTAATCATGTCCATTCCTGCAGCTTTTGTA AATGAATCAATAAAAGACTGTGGTGAAGCTGGCGTAGAAAACATGGTAGTTATTAGTGCTGGTTTCAAAGAAATTGGAGA AGAAGGTGCAAAATTAGAAGAAGAATTAGTTGCACTTAGTAAAGAATATGGGATAAATATTATTGGACCAAACAGTTTAG GAATTACAGATTCCCATACTCCATTAAACTCTTCATTTGCACAAATGATGCCGCCAAAAGGAAATATTGCATTTATTTCC CAAAGTGGAGCTATGATGGTAGCACTTCTTGATTGGAGTCTTACTTCAGGAATCGGATTCAGTAAAGTAATCAGTCTTGG AAACAAAGCAGGTGTAAGTGAAACCGAATTAATGAATTACTTAGCTGAAGACCCTGAAACTGCAGTTATTATATGTTATT TAGAATCAATATCTGACGATGATAATTTTGTTAAAGCAATGAGACAAACCACTGCTAAAAAACCAATTGTTGTACTTAAA TCCGGTTCAAGTAATGCCGGTGCAGAAGCTGCATCTTCCCACACTGGTGCTTTAGCCGGTAGTGACTTGGCATTTGATAC TGCTTTTGAACAATCCGGAATTCTTCGTGTAAGCAGCATGGCAGAATTATTTGATATCGGATTGGCATTTTCCAAAGCAC CACTTCCAGAAGGAAACAATGTAGCTATCATTACCAATGCTGGTGGTGGAGGAGTACTTACTGTAGATGAAATGGAAAGA CAGGGATTGAAACTTGTTCAATTTGATGAAGAAACCAAAGAAAAATTAAGGAAAGGTATTCCTGAAGAAGGTAGTGTAAA CAACCCTATTGATGTTTTAGGAGACGCTCCAGTACAAAGGTACAAAGAAACATTAGATATTGTTTTAAAAGATGATCAAG TAGACAGTTTAATCATTATGGTTTGTCCTACAGCATCTGCAGACCCAGACGGAATTGCAGCTGCAATCTTAGAAGAAAGA GAAAAATTCGGAAAACCTATTTTAGTTGTAAACATGGGTGGACCAACCTTTGAAGCAGCAAACCATGCACTAAGGTCCCA CAATGTGCCTACTTATGTTTTCCCTGAAAATGCAGTAGATGCACTTGCAGCTATGACAACCTATGCTGAATTGGAACGCA GAGAAGCTGATTCATGTATTGATGATTTAGACAACATCGATAAAAAAGCTGTAGAAGAAATATTTGCTAAAGTTAAAGCT GACGGCAGAGACACCTTACTTGGTAGTGAAGCATATGCAGTAGCTGAAGCTTATGGAATTGAAGCTGCACCAATTAAATT AGCTACCAATGCAGATGAAGCAAGCCAATTAGCAGCAGATATGGAATTCCCTGTTGTACTTAAAATAGCTTCTGACAAAA TACTTCACAAATCAGATATCGGCGGAGTAAAAGTAGGAATTGAAAGTGAAGAAGAAGCTAAAGCAACTTTCGATGAAATC ATAGCTAATGCTAAAAAAGCACATCCTGACATTGTGCCGGATGGTGTAGAAGTGCAAAAAATGATGGAAACCGGTCAGGA AGTAATTGTCGGTATGATTAAAGACAAACAATTCGGACCGATGATTGCATTTGGTATGGGTGGAATTTACGTTAACCTTA TTGAAGATGTATCCTTTAAATTAGCTAACGGTATCAGCAGTCAGGAAATTGATGAGCAAATCAATGACACTAAAGTTAGC GAATTGCTTAAAGGTTACAGAGGAGAAGCACCATGCGATATTGATGCTGTAAAAGAAGCTATTAAAAGAGTAGCTAGGTT AACCTTAGACTTCCCTGAAATATCCGAATTGGATATTAACCCAATTTTCGTATACGAAAACGGATCAAGTGCTCTTGATA TAAAAATCAAATTATAA
Upstream 100 bases:
>100_bases TAGTATAATAATTTTTAATTATTTATCATTACAAATTATAACGTCATAAAAATTATAATTTAAATAATGGTAAAAATTAA AGAACTAGGAGAAAAAACCT
Downstream 100 bases:
>100_bases TTTCTCATTTGAGAAATTACTCTTTTTTCTTTTAAACATTAGTTGGAGGTTATACTATAACTAATGAAATAGATTTGGAA TTATATACCATAGCTATAAC
Product: acyl-CoA synthetase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 698; Mature: 698
Protein sequence:
>698_residues MKDLNKMFKPDSVAVIGASNTPGKVGYIIIDNIISGGYKGKVYPINPKSGEIQGLKAYENIKDVPEKVDLVIMSIPAAFV NESIKDCGEAGVENMVVISAGFKEIGEEGAKLEEELVALSKEYGINIIGPNSLGITDSHTPLNSSFAQMMPPKGNIAFIS QSGAMMVALLDWSLTSGIGFSKVISLGNKAGVSETELMNYLAEDPETAVIICYLESISDDDNFVKAMRQTTAKKPIVVLK SGSSNAGAEAASSHTGALAGSDLAFDTAFEQSGILRVSSMAELFDIGLAFSKAPLPEGNNVAIITNAGGGGVLTVDEMER QGLKLVQFDEETKEKLRKGIPEEGSVNNPIDVLGDAPVQRYKETLDIVLKDDQVDSLIIMVCPTASADPDGIAAAILEER EKFGKPILVVNMGGPTFEAANHALRSHNVPTYVFPENAVDALAAMTTYAELERREADSCIDDLDNIDKKAVEEIFAKVKA DGRDTLLGSEAYAVAEAYGIEAAPIKLATNADEASQLAADMEFPVVLKIASDKILHKSDIGGVKVGIESEEEAKATFDEI IANAKKAHPDIVPDGVEVQKMMETGQEVIVGMIKDKQFGPMIAFGMGGIYVNLIEDVSFKLANGISSQEIDEQINDTKVS ELLKGYRGEAPCDIDAVKEAIKRVARLTLDFPEISELDINPIFVYENGSSALDIKIKL
Sequences:
>Translated_698_residues MKDLNKMFKPDSVAVIGASNTPGKVGYIIIDNIISGGYKGKVYPINPKSGEIQGLKAYENIKDVPEKVDLVIMSIPAAFV NESIKDCGEAGVENMVVISAGFKEIGEEGAKLEEELVALSKEYGINIIGPNSLGITDSHTPLNSSFAQMMPPKGNIAFIS QSGAMMVALLDWSLTSGIGFSKVISLGNKAGVSETELMNYLAEDPETAVIICYLESISDDDNFVKAMRQTTAKKPIVVLK SGSSNAGAEAASSHTGALAGSDLAFDTAFEQSGILRVSSMAELFDIGLAFSKAPLPEGNNVAIITNAGGGGVLTVDEMER QGLKLVQFDEETKEKLRKGIPEEGSVNNPIDVLGDAPVQRYKETLDIVLKDDQVDSLIIMVCPTASADPDGIAAAILEER EKFGKPILVVNMGGPTFEAANHALRSHNVPTYVFPENAVDALAAMTTYAELERREADSCIDDLDNIDKKAVEEIFAKVKA DGRDTLLGSEAYAVAEAYGIEAAPIKLATNADEASQLAADMEFPVVLKIASDKILHKSDIGGVKVGIESEEEAKATFDEI IANAKKAHPDIVPDGVEVQKMMETGQEVIVGMIKDKQFGPMIAFGMGGIYVNLIEDVSFKLANGISSQEIDEQINDTKVS ELLKGYRGEAPCDIDAVKEAIKRVARLTLDFPEISELDINPIFVYENGSSALDIKIKL >Mature_698_residues MKDLNKMFKPDSVAVIGASNTPGKVGYIIIDNIISGGYKGKVYPINPKSGEIQGLKAYENIKDVPEKVDLVIMSIPAAFV NESIKDCGEAGVENMVVISAGFKEIGEEGAKLEEELVALSKEYGINIIGPNSLGITDSHTPLNSSFAQMMPPKGNIAFIS QSGAMMVALLDWSLTSGIGFSKVISLGNKAGVSETELMNYLAEDPETAVIICYLESISDDDNFVKAMRQTTAKKPIVVLK SGSSNAGAEAASSHTGALAGSDLAFDTAFEQSGILRVSSMAELFDIGLAFSKAPLPEGNNVAIITNAGGGGVLTVDEMER QGLKLVQFDEETKEKLRKGIPEEGSVNNPIDVLGDAPVQRYKETLDIVLKDDQVDSLIIMVCPTASADPDGIAAAILEER EKFGKPILVVNMGGPTFEAANHALRSHNVPTYVFPENAVDALAAMTTYAELERREADSCIDDLDNIDKKAVEEIFAKVKA DGRDTLLGSEAYAVAEAYGIEAAPIKLATNADEASQLAADMEFPVVLKIASDKILHKSDIGGVKVGIESEEEAKATFDEI IANAKKAHPDIVPDGVEVQKMMETGQEVIVGMIKDKQFGPMIAFGMGGIYVNLIEDVSFKLANGISSQEIDEQINDTKVS ELLKGYRGEAPCDIDAVKEAIKRVARLTLDFPEISELDINPIFVYENGSSALDIKIKL
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfiQ [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=711, Percent_Identity=30.6610407876231, Blast_Score=337, Evalue=2e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014089 - InterPro: IPR013650 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR005809 - InterPro: IPR016102 [H]
Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]
EC number: NA
Molecular weight: Translated: 74641; Mature: 74641
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDLNKMFKPDSVAVIGASNTPGKVGYIIIDNIISGGYKGKVYPINPKSGEIQGLKAYEN CCCHHHHCCCCCEEEEECCCCCCCEEEEEEECHHCCCCCCEEEECCCCCCCCCCCHHHHH IKDVPEKVDLVIMSIPAAFVNESIKDCGEAGVENMVVISAGFKEIGEEGAKLEEELVALS HHHCCHHHCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH KEYGINIIGPNSLGITDSHTPLNSSFAQMMPPKGNIAFISQSGAMMVALLDWSLTSGIGF HHCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEEEEECHHHCCCCH SKVISLGNKAGVSETELMNYLAEDPETAVIICYLESISDDDNFVKAMRQTTAKKPIVVLK HHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE SGSSNAGAEAASSHTGALAGSDLAFDTAFEQSGILRVSSMAELFDIGLAFSKAPLPEGNN CCCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCC VAIITNAGGGGVLTVDEMERQGLKLVQFDEETKEKLRKGIPEEGSVNNPIDVLGDAPVQR EEEEEECCCCCEEEEEHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHH YKETLDIVLKDDQVDSLIIMVCPTASADPDGIAAAILEEREKFGKPILVVNMGGPTFEAA HHHHHEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHH NHALRSHNVPTYVFPENAVDALAAMTTYAELERREADSCIDDLDNIDKKAVEEIFAKVKA HHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC DGRDTLLGSEAYAVAEAYGIEAAPIKLATNADEASQLAADMEFPVVLKIASDKILHKSDI CCCCEEECCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCEEEEECCCCCEECCCC GGVKVGIESEEEAKATFDEIIANAKKAHPDIVPDGVEVQKMMETGQEVIVGMIKDKQFGP CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHEEHHHCCCCCCC MIAFGMGGIYVNLIEDVSFKLANGISSQEIDEQINDTKVSELLKGYRGEAPCDIDAVKEA EEEEECCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH IKRVARLTLDFPEISELDINPIFVYENGSSALDIKIKL HHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC >Mature Secondary Structure MKDLNKMFKPDSVAVIGASNTPGKVGYIIIDNIISGGYKGKVYPINPKSGEIQGLKAYEN CCCHHHHCCCCCEEEEECCCCCCCEEEEEEECHHCCCCCCEEEECCCCCCCCCCCHHHHH IKDVPEKVDLVIMSIPAAFVNESIKDCGEAGVENMVVISAGFKEIGEEGAKLEEELVALS HHHCCHHHCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH KEYGINIIGPNSLGITDSHTPLNSSFAQMMPPKGNIAFISQSGAMMVALLDWSLTSGIGF HHCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEEEEECHHHCCCCH SKVISLGNKAGVSETELMNYLAEDPETAVIICYLESISDDDNFVKAMRQTTAKKPIVVLK HHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE SGSSNAGAEAASSHTGALAGSDLAFDTAFEQSGILRVSSMAELFDIGLAFSKAPLPEGNN CCCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCC VAIITNAGGGGVLTVDEMERQGLKLVQFDEETKEKLRKGIPEEGSVNNPIDVLGDAPVQR EEEEEECCCCCEEEEEHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHH YKETLDIVLKDDQVDSLIIMVCPTASADPDGIAAAILEEREKFGKPILVVNMGGPTFEAA HHHHHEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHH NHALRSHNVPTYVFPENAVDALAAMTTYAELERREADSCIDDLDNIDKKAVEEIFAKVKA HHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC DGRDTLLGSEAYAVAEAYGIEAAPIKLATNADEASQLAADMEFPVVLKIASDKILHKSDI CCCCEEECCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCEEEEECCCCCEECCCC GGVKVGIESEEEAKATFDEIIANAKKAHPDIVPDGVEVQKMMETGQEVIVGMIKDKQFGP CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHEEHHHCCCCCCC MIAFGMGGIYVNLIEDVSFKLANGISSQEIDEQINDTKVSELLKGYRGEAPCDIDAVKEA EEEEECCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH IKRVARLTLDFPEISELDINPIFVYENGSSALDIKIKL HHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]