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The map label for this gene is yibD [H]

Identifier: 148643376

GI number: 148643376

Start: 1334333

End: 1335442

Strand: Reverse

Name: yibD [H]

Synonym: Msm_1316

Alternate gene names: 148643376

Gene position: 1335442-1334333 (Counterclockwise)

Preceding gene: 148643399

Following gene: 148643374

Centisome position: 72.06

GC content: 30.72

Gene sequence:

>1110_bases
ATGTCTTATAAAGTCACTGTTATTATTCCAACATACAATAGTGTAGAATTTTTAGATTCAACAATAGCTTCAATTATGAA
CCAGAGCATCGGATTTGAAAATATAGAACTGATTATTGTTGATGATTACTCTACTGACAACACACAGGAGTTAATAAACC
ACTATTGTGAAAAATATGAAAATATAAAAACCTTCGAATCAGGTAAAAAAACAGGAACACCAGGAAGAGCCAGAAACATA
GGAATAGCCAATTCTACAGCAGAATATATAATGTTTATTGATCATGACGACAATTACCTGCCCGAAAGTGTTGAAAAGTT
ATACAATGCAGTTACTGAAAATTCATGTGATGTAGCTATCGGAAAATTCCAAACATTTGGAGAGCAAAAAATAGTTCCTG
AAGACTGGATTACACATGATGTTGTTTTAAATTCAATTGATGAAGATTTACGCTTTTTTTCAATAAATAATATATGGAGA
ATGATATTTCCAAAAGATTTCCTTAATAAAAATGAAATAACTTTTCCGGAAGGAGTTTTTGCCGAAGATTTAACTTTTAT
GATTGATGCTTTTGTGAATGCCTCAAAAATAGTCTTTATAAATGATATTGTTTATAATTTCAGATTAAGAACTGGTGATA
ACAGCTCAACAAGTTTATCTAAAGGAATGCATTATTTAGATGGATTAATTGAAGGATATAATAATACAGTAGATGTACTT
AAGAAAAACAATGCATGCAAATATTACGACACTATTTTTAACCAGCATTTAAGCTGCTGGATTAGTGATGTGGCTCTAAG
TGAAACAATTGACTTTGAAGATAAAAAGGAGCTGGTAAATAAGTCACTTAAATTATTTGACGAAATGGGTGATGTTAATC
CGACTCCTGAAAATAATGCAATTAAAAGTATAATAACCCAGATAAGAGCCAGAAATCTGGATGAAGCCTACAGTCTCATG
GGTGATTATCAGCTATTTAGAAATAGAATCCATCAGCTGGAAGTTGAATTGGCTCATAAAACCCAGCAGATAGCTAATCT
GCAAACTACAAAAGGCTGGTTTAAGTATAAAACTAAAAATATAAAACAGAGATTGAAAAAAAAGATTTGA

Upstream 100 bases:

>100_bases
GGCTTTTGATTTCATGGCTATGTAAGCCAAAGGATTGCTTTTAATTGATTTAGACAAATTCATAATATATTATATAATAC
CTTAACATAAAAATAAATTT

Downstream 100 bases:

>100_bases
ATTTTAGTGTGTCATGATTCATCAAAGTGAAATACTAAAAGAAAACTTCAAAAAAATAATAAAAAACACAACACAACACA
CAATAATAAAAGCTCCATTC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSYKVTVIIPTYNSVEFLDSTIASIMNQSIGFENIELIIVDDYSTDNTQELINHYCEKYENIKTFESGKKTGTPGRARNI
GIANSTAEYIMFIDHDDNYLPESVEKLYNAVTENSCDVAIGKFQTFGEQKIVPEDWITHDVVLNSIDEDLRFFSINNIWR
MIFPKDFLNKNEITFPEGVFAEDLTFMIDAFVNASKIVFINDIVYNFRLRTGDNSSTSLSKGMHYLDGLIEGYNNTVDVL
KKNNACKYYDTIFNQHLSCWISDVALSETIDFEDKKELVNKSLKLFDEMGDVNPTPENNAIKSIITQIRARNLDEAYSLM
GDYQLFRNRIHQLEVELAHKTQQIANLQTTKGWFKYKTKNIKQRLKKKI

Sequences:

>Translated_369_residues
MSYKVTVIIPTYNSVEFLDSTIASIMNQSIGFENIELIIVDDYSTDNTQELINHYCEKYENIKTFESGKKTGTPGRARNI
GIANSTAEYIMFIDHDDNYLPESVEKLYNAVTENSCDVAIGKFQTFGEQKIVPEDWITHDVVLNSIDEDLRFFSINNIWR
MIFPKDFLNKNEITFPEGVFAEDLTFMIDAFVNASKIVFINDIVYNFRLRTGDNSSTSLSKGMHYLDGLIEGYNNTVDVL
KKNNACKYYDTIFNQHLSCWISDVALSETIDFEDKKELVNKSLKLFDEMGDVNPTPENNAIKSIITQIRARNLDEAYSLM
GDYQLFRNRIHQLEVELAHKTQQIANLQTTKGWFKYKTKNIKQRLKKKI
>Mature_368_residues
SYKVTVIIPTYNSVEFLDSTIASIMNQSIGFENIELIIVDDYSTDNTQELINHYCEKYENIKTFESGKKTGTPGRARNIG
IANSTAEYIMFIDHDDNYLPESVEKLYNAVTENSCDVAIGKFQTFGEQKIVPEDWITHDVVLNSIDEDLRFFSINNIWRM
IFPKDFLNKNEITFPEGVFAEDLTFMIDAFVNASKIVFINDIVYNFRLRTGDNSSTSLSKGMHYLDGLIEGYNNTVDVLK
KNNACKYYDTIFNQHLSCWISDVALSETIDFEDKKELVNKSLKLFDEMGDVNPTPENNAIKSIITQIRARNLDEAYSLMG
DYQLFRNRIHQLEVELAHKTQQIANLQTTKGWFKYKTKNIKQRLKKKI

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=226, Percent_Identity=27.8761061946903, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 42615; Mature: 42483

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKVTVIIPTYNSVEFLDSTIASIMNQSIGFENIELIIVDDYSTDNTQELINHYCEKYE
CCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
NIKTFESGKKTGTPGRARNIGIANSTAEYIMFIDHDDNYLPESVEKLYNAVTENSCDVAI
CCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE
GKFQTFGEQKIVPEDWITHDVVLNSIDEDLRFFSINNIWRMIFPKDFLNKNEITFPEGVF
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCHHHCCCCCCCCCCCCH
AEDLTFMIDAFVNASKIVFINDIVYNFRLRTGDNSSTSLSKGMHYLDGLIEGYNNTVDVL
HHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
KKNNACKYYDTIFNQHLSCWISDVALSETIDFEDKKELVNKSLKLFDEMGDVNPTPENNA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
IKSIITQIRARNLDEAYSLMGDYQLFRNRIHQLEVELAHKTQQIANLQTTKGWFKYKTKN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHH
IKQRLKKKI
HHHHHHHCC
>Mature Secondary Structure 
SYKVTVIIPTYNSVEFLDSTIASIMNQSIGFENIELIIVDDYSTDNTQELINHYCEKYE
CEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
NIKTFESGKKTGTPGRARNIGIANSTAEYIMFIDHDDNYLPESVEKLYNAVTENSCDVAI
CCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE
GKFQTFGEQKIVPEDWITHDVVLNSIDEDLRFFSINNIWRMIFPKDFLNKNEITFPEGVF
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCHHHCCCCCCCCCCCCH
AEDLTFMIDAFVNASKIVFINDIVYNFRLRTGDNSSTSLSKGMHYLDGLIEGYNNTVDVL
HHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
KKNNACKYYDTIFNQHLSCWISDVALSETIDFEDKKELVNKSLKLFDEMGDVNPTPENNA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
IKSIITQIRARNLDEAYSLMGDYQLFRNRIHQLEVELAHKTQQIANLQTTKGWFKYKTKN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHH
IKQRLKKKI
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]