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The map label for this gene is 148643253

Identifier: 148643253

GI number: 148643253

Start: 1191650

End: 1192984

Strand: Reverse

Name: 148643253

Synonym: Msm_1193

Alternate gene names: NA

Gene position: 1192984-1191650 (Counterclockwise)

Preceding gene: 148643254

Following gene: 148643252

Centisome position: 64.38

GC content: 33.11

Gene sequence:

>1335_bases
TTGTTAAATAGAGCTAGTGAAGCTAGTAATGTGCTTAAGAAGCATATAGAAAACAATAACGTTATAAGAATTATTTCTCA
TAATGATGCTGATGGAATTTCAGCGGCAGCTGTATTAGCTAATGCTTTAAAAGAAGAAAATGTTCAGTTTCATACTACGA
TTGTTCCTCGTCTTAAGGAAGATTTAATAAATCAGTTAAGGCATGAAAAACATGATTTGGTCATTTTTTCAGATATGGGA
AGTTCTTTTGTAGGGGAACTCAATTCTTTTAAATGTGATGTTATTATAGCTGATCATCATCAGGTTAGTGATGTTGAAGC
AGAAAGCAATGTGGTTCACATAAATCCTCATTTATTTGACATTGATGGAAGCAGGGATTTAAGTGGGGCTGGTTCCAGCT
ATTTGGCAGTTAGGGATCTTGATAAAAAACATTTAGCTTATTTTGCTTTAATTGGTGCTTTTGGTGATATGCAAGGTCAA
GATGGATTTACTGGAGTTAATAAACTTATTGTTGATGATGCTAAACAAAGTGGTAATTTGGAAATTCATGATGGTTTGAA
AATAGTTTCTAAATCATCTGAACCACTTTTTAAATCTTTAGCTTACACTTTTTCTCCTCCGCTTCCAGGAATAACTGGGG
ATTTGGAAGGTTCAACTGAGTTTTTAGAAAAGATGAATTTGTCTTATGGAATTAAATTCACTGATTTAGGTGAAGAGGAA
AAAGATATTCTTAAAGATGAACTTATTAAAATCAATCCGGATATCTTCGGGGATTGTTACACAGTTCCAAAAGAAATACC
TTTGCTTCGTGATTTGGAAGAGTATTCATATATTCTTGATGCATGCGGTAAAAATAAGAAGTTTGGATTAGGTTTAAGCA
TAGCTCTTGGAGAACGTGAAAAAGCCTTAAAAACAGCTACTGATTTGCAACGCAAATACCGTGATCAACTTGTTAAAGGA
TTGGAATGGATTAAAAGGGAAGGTTCAGTTAATCTTTCTAATATTCAATATTTATACAGTGAGGATAAAGTGTTGAAATC
TGTAATGGGTACAATAGCTAGTATAGGTTTGTCTATTAACTTGTTGGATGATTCAAAACCTGTTTTAGGATTATCTAGAC
TTCATAAGGATATTAAAGTTTCTGGAAGAACAACCAGACAACAAGTTGAAAAAGGAGTTAATTTGGGAAAAGCCTTACAG
GATAGCTCCAACAATTTCGGTGGTCAGGGTGGAGGTCATGATATTGCTGCAGGGGCTATGATTCCATTTGATAGTAAGGA
TAACTTTTTAAACTTAGTTAATGATATGGTTGAATATCAAATAAATAATGATTAA

Upstream 100 bases:

>100_bases
ACTATCATTGAATCTAGAATCAGGAGATTAGCTTCATATTATGTAAATGAAGGTGCATTACCTGAAGGATGGAGATACAA
TCCAAAAGAAGCAGCACTCC

Downstream 100 bases:

>100_bases
TATGTTTTTAACAAAAAAAGAAGAACAAATGTGTGATGGGGAGTTTGGAGAAACTATTAGAAAAAGCATGGATATATTAG
TGGCTTTAGGAGATATTTAT

Product: single-stranded DNA-specific exonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MLNRASEASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKEDLINQLRHEKHDLVIFSDMG
SSFVGELNSFKCDVIIADHHQVSDVEAESNVVHINPHLFDIDGSRDLSGAGSSYLAVRDLDKKHLAYFALIGAFGDMQGQ
DGFTGVNKLIVDDAKQSGNLEIHDGLKIVSKSSEPLFKSLAYTFSPPLPGITGDLEGSTEFLEKMNLSYGIKFTDLGEEE
KDILKDELIKINPDIFGDCYTVPKEIPLLRDLEEYSYILDACGKNKKFGLGLSIALGEREKALKTATDLQRKYRDQLVKG
LEWIKREGSVNLSNIQYLYSEDKVLKSVMGTIASIGLSINLLDDSKPVLGLSRLHKDIKVSGRTTRQQVEKGVNLGKALQ
DSSNNFGGQGGGHDIAAGAMIPFDSKDNFLNLVNDMVEYQINND

Sequences:

>Translated_444_residues
MLNRASEASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKEDLINQLRHEKHDLVIFSDMG
SSFVGELNSFKCDVIIADHHQVSDVEAESNVVHINPHLFDIDGSRDLSGAGSSYLAVRDLDKKHLAYFALIGAFGDMQGQ
DGFTGVNKLIVDDAKQSGNLEIHDGLKIVSKSSEPLFKSLAYTFSPPLPGITGDLEGSTEFLEKMNLSYGIKFTDLGEEE
KDILKDELIKINPDIFGDCYTVPKEIPLLRDLEEYSYILDACGKNKKFGLGLSIALGEREKALKTATDLQRKYRDQLVKG
LEWIKREGSVNLSNIQYLYSEDKVLKSVMGTIASIGLSINLLDDSKPVLGLSRLHKDIKVSGRTTRQQVEKGVNLGKALQ
DSSNNFGGQGGGHDIAAGAMIPFDSKDNFLNLVNDMVEYQINND
>Mature_444_residues
MLNRASEASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKEDLINQLRHEKHDLVIFSDMG
SSFVGELNSFKCDVIIADHHQVSDVEAESNVVHINPHLFDIDGSRDLSGAGSSYLAVRDLDKKHLAYFALIGAFGDMQGQ
DGFTGVNKLIVDDAKQSGNLEIHDGLKIVSKSSEPLFKSLAYTFSPPLPGITGDLEGSTEFLEKMNLSYGIKFTDLGEEE
KDILKDELIKINPDIFGDCYTVPKEIPLLRDLEEYSYILDACGKNKKFGLGLSIALGEREKALKTATDLQRKYRDQLVKG
LEWIKREGSVNLSNIQYLYSEDKVLKSVMGTIASIGLSINLLDDSKPVLGLSRLHKDIKVSGRTTRQQVEKGVNLGKALQ
DSSNNFGGQGGGHDIAAGAMIPFDSKDNFLNLVNDMVEYQINND

Specific function: Unknown

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0977 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: NA

Molecular weight: Translated: 48934; Mature: 48934

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00359 RIBOSOMAL_L11

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRASEASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE
CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
DLINQLRHEKHDLVIFSDMGSSFVGELNSFKCDVIIADHHQVSDVEAESNVVHINPHLFD
HHHHHHHCCCCCEEEEECCCCHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCEEEE
IDGSRDLSGAGSSYLAVRDLDKKHLAYFALIGAFGDMQGQDGFTGVNKLIVDDAKQSGNL
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCE
EIHDGLKIVSKSSEPLFKSLAYTFSPPLPGITGDLEGSTEFLEKMNLSYGIKFTDLGEEE
EEECCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCHH
KDILKDELIKINPDIFGDCYTVPKEIPLLRDLEEYSYILDACGKNKKFGLGLSIALGERE
HHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHH
KALKTATDLQRKYRDQLVKGLEWIKREGSVNLSNIQYLYSEDKVLKSVMGTIASIGLSIN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEHHHHHHHHHHHHHHHHHCCEEE
LLDDSKPVLGLSRLHKDIKVSGRTTRQQVEKGVNLGKALQDSSNNFGGQGGGHDIAAGAM
EECCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEECCCE
IPFDSKDNFLNLVNDMVEYQINND
ECCCCCCHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MLNRASEASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE
CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
DLINQLRHEKHDLVIFSDMGSSFVGELNSFKCDVIIADHHQVSDVEAESNVVHINPHLFD
HHHHHHHCCCCCEEEEECCCCHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCEEEE
IDGSRDLSGAGSSYLAVRDLDKKHLAYFALIGAFGDMQGQDGFTGVNKLIVDDAKQSGNL
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCE
EIHDGLKIVSKSSEPLFKSLAYTFSPPLPGITGDLEGSTEFLEKMNLSYGIKFTDLGEEE
EEECCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCHH
KDILKDELIKINPDIFGDCYTVPKEIPLLRDLEEYSYILDACGKNKKFGLGLSIALGERE
HHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHH
KALKTATDLQRKYRDQLVKGLEWIKREGSVNLSNIQYLYSEDKVLKSVMGTIASIGLSIN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEHHHHHHHHHHHHHHHHHCCEEE
LLDDSKPVLGLSRLHKDIKVSGRTTRQQVEKGVNLGKALQDSSNNFGGQGGGHDIAAGAM
EECCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEECCCE
IPFDSKDNFLNLVNDMVEYQINND
ECCCCCCHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]