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The map label for this gene is 148643192

Identifier: 148643192

GI number: 148643192

Start: 1111818

End: 1111994

Strand: Reverse

Name: 148643192

Synonym: Msm_1132

Alternate gene names: NA

Gene position: 1111994-1111818 (Counterclockwise)

Preceding gene: 148643193

Following gene: 148643191

Centisome position: 60.01

GC content: 31.64

Gene sequence:

>177_bases
ATGAATATGAAAATGAACAAATGTCCTGATTGTAAAATTTATACAATGGAGGATGCTTGCCCTCAATGTGGCGGTGAGCT
TAAAGTTATTTATCCTCCCAAATTTTCTATTGAGGATAAATACGGAAAATATCGCCGAATATTAAAAAAAGAAGCTATGA
ATAAAAAGGATGATTAG

Upstream 100 bases:

>100_bases
TGAAAAAGCTCTTAAAGCAGCAGCTGACAGATGTATTGAAATAGTTGAAGCTTCTGAAGGAAATGGTTCTTTCTTAAGAG
AGTTGGATAGCTAGATTTTT

Downstream 100 bases:

>100_bases
ATGGAAATCACACAAATTACTGTTTTAGAGGATGTTGAATTAAACAATCCTGTTTTTATAGAAGCATTGCCAGGTATTGG
TCATGTAGGTAAATTAGCTG

Product: ribosome biogenesis protein Nop10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 58; Mature: 58

Protein sequence:

>58_residues
MNMKMNKCPDCKIYTMEDACPQCGGELKVIYPPKFSIEDKYGKYRRILKKEAMNKKDD

Sequences:

>Translated_58_residues
MNMKMNKCPDCKIYTMEDACPQCGGELKVIYPPKFSIEDKYGKYRRILKKEAMNKKDD
>Mature_58_residues
MNMKMNKCPDCKIYTMEDACPQCGGELKVIYPPKFSIEDKYGKYRRILKKEAMNKKDD

Specific function: Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA

COG id: COG2260

COG function: function code J; Predicted Zn-ribbon RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NOP10 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOP10_METS3 (A5UMA9)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273705.1
- ProteinModelPortal:   A5UMA9
- SMR:   A5UMA9
- STRING:   A5UMA9
- GeneID:   5217535
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_1132
- eggNOG:   arNOG14058
- HOGENOM:   HBG498094
- OMA:   KYGKYRR
- ProtClustDB:   CLSK2791229
- HAMAP:   MF_00803
- InterPro:   IPR007264

Pfam domain/function: PF04135 Nop10p

EC number: NA

Molecular weight: Translated: 6839; Mature: 6839

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.9 %Cys     (Translated Protein)
8.6 %Met     (Translated Protein)
15.5 %Cys+Met (Translated Protein)
6.9 %Cys     (Mature Protein)
8.6 %Met     (Mature Protein)
15.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKMNKCPDCKIYTMEDACPQCGGELKVIYPPKFSIEDKYGKYRRILKKEAMNKKDD
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNMKMNKCPDCKIYTMEDACPQCGGELKVIYPPKFSIEDKYGKYRRILKKEAMNKKDD
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA