Click here to switch to the map view.

The map label for this gene is sufB [C]

Identifier: 148643062

GI number: 148643062

Start: 967600

End: 968844

Strand: Reverse

Name: sufB [C]

Synonym: Msm_1002

Alternate gene names: 148643062

Gene position: 968844-967600 (Counterclockwise)

Preceding gene: 148643063

Following gene: 148643061

Centisome position: 52.28

GC content: 34.62

Gene sequence:

>1245_bases
GTGTTGAATGTGCGCAATGTATTAAATGATGCCGAAAGAGCTAAAGATAAAAAAGCTCCAATTGGTGTAGATGTTACAAT
TGAAAATTTTTCAGATGAAATTATAGATGGAATTGATCTTTTAGATGATTTAGATGATGTATCTAAAAAAACTAAAAACA
CTCTTTTGAAAGTTGGTGTGGATACTGAAGAAAAAGGAAGGTCAGGTTCATTTTTACAAGTTGATCAGTCCAATATATTT
ACAAATAATTCAATGTCCAATTCAGTTGAAGTTATGAATATTGGTGTTGCTCTGGATAAATATCACTGGGTTAAAGATTA
CATGTGGAATGTTGTAAAACCTGATGCAGATAAATATACTGCTAAAACCGCTTTACGTGAAGAAAAAGATGGAATTAAAA
GTGGATATTTTGTAAGGTCCTTACCTGGAACTAAGGAAGTTTTCCCTGTACAAGCATGTATGTTTATCAGTGATGAGGAT
ATTATGCAAACTGCACATAATGTTATCATTGCTGAAGAAAACTCTGAATTACATTTGATTACAGGCTGTGCAACTGGTGA
AGATGTTTCATCTGCAATGCATGTCGGAGTATCTGAATTGTATGTAAAACCAGGTGCTAAAATAACTTTCACTATGGTTC
ATAACTGGGCAGAGCAGGTTGAAGTACGTCCAAGAACAGGAATTAAAGTTGAAGAAAACGGTACCTATTTAAATAATTAT
ATTTTAACCAGTCCTGTTAATACTCTACAGTCCTATCCTACTGCTTATTGTGACGGTGCAAATTCAAGAGCTATTTTCCA
AAGTATTCAAGGAGGTAAAAAAGATTCTATTATTGATGTAGGATCAAGAGCTTACCTTAATGCTCCTGGTTCAAGAGGAG
AAATTATTTCCCGTGCAGTATCTCAGGATGAATCTCAAATATTTGCTAGAGGACATTTGGCCGGAACTGTTCCTGAAGTT
AAAGGTCATCTGGAATGTCATGGATTAGTATTGTCTGATGATAGTATGATTTATGCTGTTCCTGAACTTGAGGCAAGTTC
TGCAAATCTTGAAATGTCTCACGAAGCAGCAGTTGGAAAAATCGATGAAGACGAAATCAATTATTTAACTTCAAGAGGAA
TAACTGAAGAAGAAGCAGCATCCATGATTGTAAGAGGTTTCTTAAGTATGGATATTACTGGACTTCCTGATGAATTAGCT
GCTGAAACTCAAAAAATGATTGATATGAGCGTAAATGGGATGTAA

Upstream 100 bases:

>100_bases
AGTGCGGATAAAGCTCATGTTTTAATGGATGGTAAAATAGCTTGTTCAGGTAATCCTGCTGAGATTATTGAGGATATTAG
GAAAGAAGGATTTAACGGAT

Downstream 100 bases:

>100_bases
TCCCTTTTTCTTTTCTTTTTTTTAAATTTTAACTTTTTTTATTAATTTCTAAAAATCTTGTTTTATAGTATATAAACTTT
TTGGCTTTAAGTTCTAAGTA

Product: ABC transporter involved in Fe-S cluster assembly, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MLNVRNVLNDAERAKDKKAPIGVDVTIENFSDEIIDGIDLLDDLDDVSKKTKNTLLKVGVDTEEKGRSGSFLQVDQSNIF
TNNSMSNSVEVMNIGVALDKYHWVKDYMWNVVKPDADKYTAKTALREEKDGIKSGYFVRSLPGTKEVFPVQACMFISDED
IMQTAHNVIIAEENSELHLITGCATGEDVSSAMHVGVSELYVKPGAKITFTMVHNWAEQVEVRPRTGIKVEENGTYLNNY
ILTSPVNTLQSYPTAYCDGANSRAIFQSIQGGKKDSIIDVGSRAYLNAPGSRGEIISRAVSQDESQIFARGHLAGTVPEV
KGHLECHGLVLSDDSMIYAVPELEASSANLEMSHEAAVGKIDEDEINYLTSRGITEEEAASMIVRGFLSMDITGLPDELA
AETQKMIDMSVNGM

Sequences:

>Translated_414_residues
MLNVRNVLNDAERAKDKKAPIGVDVTIENFSDEIIDGIDLLDDLDDVSKKTKNTLLKVGVDTEEKGRSGSFLQVDQSNIF
TNNSMSNSVEVMNIGVALDKYHWVKDYMWNVVKPDADKYTAKTALREEKDGIKSGYFVRSLPGTKEVFPVQACMFISDED
IMQTAHNVIIAEENSELHLITGCATGEDVSSAMHVGVSELYVKPGAKITFTMVHNWAEQVEVRPRTGIKVEENGTYLNNY
ILTSPVNTLQSYPTAYCDGANSRAIFQSIQGGKKDSIIDVGSRAYLNAPGSRGEIISRAVSQDESQIFARGHLAGTVPEV
KGHLECHGLVLSDDSMIYAVPELEASSANLEMSHEAAVGKIDEDEINYLTSRGITEEEAASMIVRGFLSMDITGLPDELA
AETQKMIDMSVNGM
>Mature_414_residues
MLNVRNVLNDAERAKDKKAPIGVDVTIENFSDEIIDGIDLLDDLDDVSKKTKNTLLKVGVDTEEKGRSGSFLQVDQSNIF
TNNSMSNSVEVMNIGVALDKYHWVKDYMWNVVKPDADKYTAKTALREEKDGIKSGYFVRSLPGTKEVFPVQACMFISDED
IMQTAHNVIIAEENSELHLITGCATGEDVSSAMHVGVSELYVKPGAKITFTMVHNWAEQVEVRPRTGIKVEENGTYLNNY
ILTSPVNTLQSYPTAYCDGANSRAIFQSIQGGKKDSIIDVGSRAYLNAPGSRGEIISRAVSQDESQIFARGHLAGTVPEV
KGHLECHGLVLSDDSMIYAVPELEASSANLEMSHEAAVGKIDEDEINYLTSRGITEEEAASMIVRGFLSMDITGLPDELA
AETQKMIDMSVNGM

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=317, Percent_Identity=25.2365930599369, Blast_Score=101, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45375; Mature: 45375

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNVRNVLNDAERAKDKKAPIGVDVTIENFSDEIIDGIDLLDDLDDVSKKTKNTLLKVGV
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECC
DTEEKGRSGSFLQVDQSNIFTNNSMSNSVEVMNIGVALDKYHWVKDYMWNVVKPDADKYT
CCCCCCCCCCEEEEECCCEEECCCCCCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCHHHH
AKTALREEKDGIKSGYFVRSLPGTKEVFPVQACMFISDEDIMQTAHNVIIAEENSELHLI
HHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEECCHHHHHHHCCEEEEECCCCEEEE
TGCATGEDVSSAMHVGVSELYVKPGAKITFTMVHNWAEQVEVRPRTGIKVEENGTYLNNY
EECCCCHHHHHHHHCCHHHEEECCCCEEEEEEEHHHHHHCEECCCCCCEECCCCCEEECE
ILTSPVNTLQSYPTAYCDGANSRAIFQSIQGGKKDSIIDVGSRAYLNAPGSRGEIISRAV
EEECCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCEEECCCCCCHHHHHHHH
SQDESQIFARGHLAGTVPEVKGHLECHGLVLSDDSMIYAVPELEASSANLEMSHEAAVGK
CCCHHHHEECCCCCCCCHHHCCCEEEEEEEEECCCEEEEECCCCCCCCCCEECCHHHCCC
IDEDEINYLTSRGITEEEAASMIVRGFLSMDITGLPDELAAETQKMIDMSVNGM
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLNVRNVLNDAERAKDKKAPIGVDVTIENFSDEIIDGIDLLDDLDDVSKKTKNTLLKVGV
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECC
DTEEKGRSGSFLQVDQSNIFTNNSMSNSVEVMNIGVALDKYHWVKDYMWNVVKPDADKYT
CCCCCCCCCCEEEEECCCEEECCCCCCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCHHHH
AKTALREEKDGIKSGYFVRSLPGTKEVFPVQACMFISDEDIMQTAHNVIIAEENSELHLI
HHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEECCHHHHHHHCCEEEEECCCCEEEE
TGCATGEDVSSAMHVGVSELYVKPGAKITFTMVHNWAEQVEVRPRTGIKVEENGTYLNNY
EECCCCHHHHHHHHCCHHHEEECCCCEEEEEEEHHHHHHCEECCCCCCEECCCCCEEECE
ILTSPVNTLQSYPTAYCDGANSRAIFQSIQGGKKDSIIDVGSRAYLNAPGSRGEIISRAV
EEECCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCEEECCCCCCHHHHHHHH
SQDESQIFARGHLAGTVPEVKGHLECHGLVLSDDSMIYAVPELEASSANLEMSHEAAVGK
CCCHHHHEECCCCCCCCHHHCCCEEEEEEEEECCCEEEEECCCCCCCCCCEECCHHHCCC
IDEDEINYLTSRGITEEEAASMIVRGFLSMDITGLPDELAAETQKMIDMSVNGM
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]