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The map label for this gene is rpl10e [H]

Identifier: 148643049

GI number: 148643049

Start: 950165

End: 950647

Strand: Reverse

Name: rpl10e [H]

Synonym: Msm_0989

Alternate gene names: 148643049

Gene position: 950647-950165 (Counterclockwise)

Preceding gene: 148643050

Following gene: 148643048

Centisome position: 51.3

GC content: 35.2

Gene sequence:

>483_bases
ATGGTTCGTGCTTATACAAGAAGAGATTATATTAGAAAAACCCCAAATTCAAGAATTGTTCAATATGATATGGGTAATTT
AACTGACGAGTTTCCAGTTTCAGTAAGTTTAGCTGTAAAAAAACCTGCTCAAATTAGACATAACTCTTTAGAAGCAGCAA
GGATTGCATCTAACAGGCTTATGCAAAGAAAAGCTGGAAGATTAGGTTACCACTTAAAATTAAGAACTTACCCTCACCAA
ATTGTAAGGGAAAATCCTATGGCTACCGGTGCAGGAGCAGATAGGGTTCAAAGTGGTATGAGAAACGCATTTGGTAAACC
AATCAGTGTTGAAGCTATTGTTAAAGCAGGTCAAAGGATTATTACCATTGACACCAACAAGAAAAACTTTGAAGATGCTA
AATTAGCATTAAAAAGAGCAGGGATGAAATTACCAGTTTCCTGTAGAATTGTTGTTGACAAAGGCGAAGAATTAGTTTTA
TAA

Upstream 100 bases:

>100_bases
ACATAGCTATTTAGAGATACACTATAATTTTATTATAGATAGCTATTTTTTAATCAAACATATATAATTAGATGTTTGGA
TTATTTTCGGAGGAATTATA

Downstream 100 bases:

>100_bases
ATTTAACTAATTTTTACTTACTATTTTTTTTTTAAATTTTTTTCAATCACTTTTTTTACAGCTTCTTTTGATTAAATATT
TAAGTGTTAAAATTTATACA

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MVRAYTRRDYIRKTPNSRIVQYDMGNLTDEFPVSVSLAVKKPAQIRHNSLEAARIASNRLMQRKAGRLGYHLKLRTYPHQ
IVRENPMATGAGADRVQSGMRNAFGKPISVEAIVKAGQRIITIDTNKKNFEDAKLALKRAGMKLPVSCRIVVDKGEELVL

Sequences:

>Translated_160_residues
MVRAYTRRDYIRKTPNSRIVQYDMGNLTDEFPVSVSLAVKKPAQIRHNSLEAARIASNRLMQRKAGRLGYHLKLRTYPHQ
IVRENPMATGAGADRVQSGMRNAFGKPISVEAIVKAGQRIITIDTNKKNFEDAKLALKRAGMKLPVSCRIVVDKGEELVL
>Mature_160_residues
MVRAYTRRDYIRKTPNSRIVQYDMGNLTDEFPVSVSLAVKKPAQIRHNSLEAARIASNRLMQRKAGRLGYHLKLRTYPHQ
IVRENPMATGAGADRVQSGMRNAFGKPISVEAIVKAGQRIITIDTNKKNFEDAKLALKRAGMKLPVSCRIVVDKGEELVL

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family [H]

Homologues:

Organism=Homo sapiens, GI18152783, Length=155, Percent_Identity=38.0645161290323, Blast_Score=113, Evalue=8e-26,
Organism=Homo sapiens, GI223890243, Length=155, Percent_Identity=37.4193548387097, Blast_Score=111, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17533037, Length=146, Percent_Identity=34.9315068493151, Blast_Score=102, Evalue=7e-23,
Organism=Saccharomyces cerevisiae, GI6323104, Length=155, Percent_Identity=38.7096774193548, Blast_Score=112, Evalue=4e-26,
Organism=Drosophila melanogaster, GI221513696, Length=155, Percent_Identity=33.5483870967742, Blast_Score=101, Evalue=2e-22,
Organism=Drosophila melanogaster, GI221513692, Length=155, Percent_Identity=33.5483870967742, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255 [H]

Pfam domain/function: PF00252 Ribosomal_L16 [H]

EC number: NA

Molecular weight: Translated: 17973; Mature: 17973

Theoretical pI: Translated: 11.12; Mature: 11.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRAYTRRDYIRKTPNSRIVQYDMGNLTDEFPVSVSLAVKKPAQIRHNSLEAARIASNRL
CCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHH
MQRKAGRLGYHLKLRTYPHQIVRENPMATGAGADRVQSGMRNAFGKPISVEAIVKAGQRI
HHHHCCCCCEEEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCEE
ITIDTNKKNFEDAKLALKRAGMKLPVSCRIVVDKGEELVL
EEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCEECC
>Mature Secondary Structure
MVRAYTRRDYIRKTPNSRIVQYDMGNLTDEFPVSVSLAVKKPAQIRHNSLEAARIASNRL
CCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHH
MQRKAGRLGYHLKLRTYPHQIVRENPMATGAGADRVQSGMRNAFGKPISVEAIVKAGQRI
HHHHCCCCCEEEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCEE
ITIDTNKKNFEDAKLALKRAGMKLPVSCRIVVDKGEELVL
EEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]