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The map label for this gene is ftsY [C]

Identifier: 148642761

GI number: 148642761

Start: 674910

End: 676322

Strand: Reverse

Name: ftsY [C]

Synonym: Msm_0701

Alternate gene names: 148642761

Gene position: 676322-674910 (Counterclockwise)

Preceding gene: 148642762

Following gene: 148642760

Centisome position: 36.5

GC content: 36.94

Gene sequence:

>1413_bases
TTGTTTGAATCTTTGAAAAAGAAGTTTTCACGAACTAGTGATAAATTAGAAGAAGAGCTTATTGAAGAAGCACAGGAAGA
AAACAATCTTGAAGAGGAATCCGGTAAAAAATTCTCCTTTTTTTCATTTGGCAGGAAAGATAAAAAAGAAGAAGAGGATT
CTAAAAGTGATGTAGCGGAAATTCCTCAGGAAGTTGAAAGTATTCAAGAAACTGACACTTCAGATGATGAAACCTCTGAT
GATAAAGATGAAAAATCTGGTTTCTGGAGTTTTGGTAAAAAATCCAGTGATAATAAGGAAGAGCCTCAGGAGGAAGAAGA
ATCAGCTGAAGAGATTCAAGAGGAAGAAGAACCTAAAAAATCTCATTTCTGGAGCAGAAATAAAGAGGAAGACACTGAAG
AATCAGAAGATGCCGATGAAAAAACAGAAGAGAAAAAATCCCGTTTCTGGAGCAGAAATAAAGATAATGATTCTTCTGAA
GAAAATGATGAAGATGAAGAATCAAGCGGAATGTTTTCATTTATTACTGCCAAAACCATTTCAGAAAAACACCTTGAAGA
TATTTTATGGGAACTTGAAATGGGTCTTTTGGAAGGGGACGTGGCTATGGAAGTAGCTAGTGCAGTAGTGGATTCTGTTA
AAGATGATCTGGTTGGCCGTAAAATCAAAAGAAGCAATGACATTACTGAATATACCTACAATGCACTAAGAAATGCTGTA
GCTGAAATTATTGATATTCCGGGCAAGTCAATGACTGAAATGATTGAAGCCAAAAAAGCACAGGGCGAACCTCTTGTTGT
AATGTTTGTCGGTATTAACGGAACAGGTAAAACAACAACCATCGGTAAATTAGCTAATTATTATCTTAAAAAAGGTTATA
CTCCTGTAATAGCTGCTGCAGATACTTTCAGAGCAGGTGCTATTGAACAGGTTAATTACCATGCAGACAAGGTTGGAGTT
AAGCTTATCAAACACCAGAAGGGTTCAGATCCTGCAGCTGTTGCATTTGATGCAGTTGAACATGCAAAAGCTCAAGGTAA
AGAGCTGGTTTTAATTGATACTGCAGGTAGGATGCAGACCAACACCAATCTTATGGATGAAATGAAAAAGATTAAGAGAG
TTGCAAAACCTGATTTGGTTGTCTTTGTAGGGGATGCCCTAACAGGTAATGATGCAACCCAGCAGGCTTCCAAATTTAAT
GAAGCTATTGACCTTGACGGTGTTATTTTAACTAAAGCAGATGCTGACAGTAAAGGAGGAGCATCATTATCTATTGGTTA
TGTTATCAAAAAACCTATTCTCTTTTTGGGAATGGGTCAGGGATATGATGACATTAAGGAATATGATGCTGACTGGATGC
TGAATCAGCTCTTTTCTGAAAGCGGAGAAGAGGTAAACATTAATGAAGCTTAA

Upstream 100 bases:

>100_bases
TTACTTTTTTTATTTAATTTATTTTTCCATATTTTGCTTATTTTTTAAATATTATAAAAAACATATTATTTTCTAATTAA
ACCATAAGGTTGTGTAAAAT

Downstream 100 bases:

>100_bases
AAAAATAACATTAATTTTAATTATTATTTTGGCAGTGTTGGTTTTGATAGCTGGTGCAGCCACATTCACCAGCAACAATT
CAATAATAGAAACACCTAAG

Product: signal recognition particle GTPase SRP54

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MFESLKKKFSRTSDKLEEELIEEAQEENNLEEESGKKFSFFSFGRKDKKEEEDSKSDVAEIPQEVESIQETDTSDDETSD
DKDEKSGFWSFGKKSSDNKEEPQEEEESAEEIQEEEEPKKSHFWSRNKEEDTEESEDADEKTEEKKSRFWSRNKDNDSSE
ENDEDEESSGMFSFITAKTISEKHLEDILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRNAV
AEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIAAADTFRAGAIEQVNYHADKVGV
KLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRMQTNTNLMDEMKKIKRVAKPDLVVFVGDALTGNDATQQASKFN
EAIDLDGVILTKADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDADWMLNQLFSESGEEVNINEA

Sequences:

>Translated_470_residues
MFESLKKKFSRTSDKLEEELIEEAQEENNLEEESGKKFSFFSFGRKDKKEEEDSKSDVAEIPQEVESIQETDTSDDETSD
DKDEKSGFWSFGKKSSDNKEEPQEEEESAEEIQEEEEPKKSHFWSRNKEEDTEESEDADEKTEEKKSRFWSRNKDNDSSE
ENDEDEESSGMFSFITAKTISEKHLEDILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRNAV
AEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIAAADTFRAGAIEQVNYHADKVGV
KLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRMQTNTNLMDEMKKIKRVAKPDLVVFVGDALTGNDATQQASKFN
EAIDLDGVILTKADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDADWMLNQLFSESGEEVNINEA
>Mature_470_residues
MFESLKKKFSRTSDKLEEELIEEAQEENNLEEESGKKFSFFSFGRKDKKEEEDSKSDVAEIPQEVESIQETDTSDDETSD
DKDEKSGFWSFGKKSSDNKEEPQEEEESAEEIQEEEEPKKSHFWSRNKEEDTEESEDADEKTEEKKSRFWSRNKDNDSSE
ENDEDEESSGMFSFITAKTISEKHLEDILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRNAV
AEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIAAADTFRAGAIEQVNYHADKVGV
KLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRMQTNTNLMDEMKKIKRVAKPDLVVFVGDALTGNDATQQASKFN
EAIDLDGVILTKADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDADWMLNQLFSESGEEVNINEA

Specific function: Probably involved in the signal sequence recognition [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI23308697, Length=320, Percent_Identity=35, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI295424842, Length=320, Percent_Identity=35, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI4507215, Length=291, Percent_Identity=31.9587628865979, Blast_Score=156, Evalue=5e-38,
Organism=Homo sapiens, GI226371618, Length=198, Percent_Identity=37.3737373737374, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI89061728, Length=129, Percent_Identity=34.1085271317829, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI1789874, Length=366, Percent_Identity=34.4262295081967, Blast_Score=181, Evalue=8e-47,
Organism=Escherichia coli, GI1788963, Length=280, Percent_Identity=34.6428571428571, Blast_Score=171, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI193206261, Length=471, Percent_Identity=30.5732484076433, Blast_Score=189, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17539958, Length=285, Percent_Identity=34.3859649122807, Blast_Score=160, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6320498, Length=319, Percent_Identity=32.6018808777429, Blast_Score=163, Evalue=5e-41,
Organism=Saccharomyces cerevisiae, GI6325345, Length=275, Percent_Identity=29.0909090909091, Blast_Score=139, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24641198, Length=341, Percent_Identity=33.7243401759531, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI17647949, Length=297, Percent_Identity=32.3232323232323, Blast_Score=157, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 52570; Mature: 52570

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFESLKKKFSRTSDKLEEELIEEAQEENNLEEESGKKFSFFSFGRKDKKEEEDSKSDVAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEHHCCCCCCCHHHHHHHHHHH
IPQEVESIQETDTSDDETSDDKDEKSGFWSFGKKSSDNKEEPQEEEESAEEIQEEEEPKK
HHHHHHHHHHCCCCCCCCCCCCHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHH
SHFWSRNKEEDTEESEDADEKTEEKKSRFWSRNKDNDSSEENDEDEESSGMFSFITAKTI
HHHCCCCCCCCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCEEEHHHHHH
SEKHLEDILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRNAV
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIAAA
HHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECC
DTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRMQT
CHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
NTNLMDEMKKIKRVAKPDLVVFVGDALTGNDATQQASKFNEAIDLDGVILTKADADSKGG
CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
ASLSIGYVIKKPILFLGMGQGYDDIKEYDADWMLNQLFSESGEEVNINEA
CEEEEHHHHHCCEEEEECCCCHHHHHHHCHHHHHHHHHHCCCCEEECCCC
>Mature Secondary Structure
MFESLKKKFSRTSDKLEEELIEEAQEENNLEEESGKKFSFFSFGRKDKKEEEDSKSDVAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEHHCCCCCCCHHHHHHHHHHH
IPQEVESIQETDTSDDETSDDKDEKSGFWSFGKKSSDNKEEPQEEEESAEEIQEEEEPKK
HHHHHHHHHHCCCCCCCCCCCCHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHH
SHFWSRNKEEDTEESEDADEKTEEKKSRFWSRNKDNDSSEENDEDEESSGMFSFITAKTI
HHHCCCCCCCCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCEEEHHHHHH
SEKHLEDILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRNAV
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIAAA
HHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECC
DTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRMQT
CHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
NTNLMDEMKKIKRVAKPDLVVFVGDALTGNDATQQASKFNEAIDLDGVILTKADADSKGG
CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
ASLSIGYVIKKPILFLGMGQGYDDIKEYDADWMLNQLFSESGEEVNINEA
CEEEEHHHHHCCEEEEECCCCHHHHHHHCHHHHHHHHHHCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]