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The map label for this gene is 148642603

Identifier: 148642603

GI number: 148642603

Start: 523153

End: 523944

Strand: Reverse

Name: 148642603

Synonym: Msm_0543

Alternate gene names: NA

Gene position: 523944-523153 (Counterclockwise)

Preceding gene: 148642605

Following gene: 148642600

Centisome position: 28.27

GC content: 29.17

Gene sequence:

>792_bases
ATGGGATGTTCATTTGACTGTGTATACTGTTATATAAACGGAAGTAAATATGCAAAGAAAACCAACAGCTATTATGTAAA
ATCTAATGCATGTGATCTGGTTTATAACAAATTAAAAAAATTAGCCAGAAATCACGAAAGAGTATTTTTAAATTTCGGTT
CGGCATCTGATCCATATATGGAAATAGAAAAGGAATTGGAATTAACACGTGAGATTTTAAAAATATTTCTAAGATTCAAA
TATCCCGTACACATTATAACAAAATCTGACTTAATTTTAAGGGACACTGACATTCTAAAAAAGATAAATGATGCAGCGAT
ACTGCCTGATGATTTGAAAGGTTTAAAATCAAAAGTTTGTGTAACATTTTCATTTTCAACAGTTGATGATGATTTAGCTA
GTTTGGTTGAGCCAAATGCACCTTTGCCTTCACAAAGACTAAAAGCAATGAATACATTAGCTAAGAAAGGTTTTCATGTA
GGAGTTGCATTGATGCCAATATTGCCTTATATTAATGATGATTTGGAAAGTCTTGAAAATTTTGTTAAAGTATTTAGGAA
AAGCAATGCTGCCTATTTAATTCCAGGTGCACTTTCACTTTTTGGAAGCAGTGAAATTTCATCTAGAATAAAGTATTATA
ATTTTGTTAAAAGTAATTTTCCGGAAATACTGGATGATGTAAAAAGCTTATTTTATAATAGGGAATATCCTTCAAATAAG
TATCAGAATAATTTATATAGAAAAGTAGTAAGAATTTGTAAAAAACAGGGCATCAAAACAGCAATGATTTAA

Upstream 100 bases:

>100_bases
ATATGGATTTAAAAACAAAAAAGTAAATTCAATTTTCAATAAAAGAAAAGGGGAAAGAAATTTTAATCTCTTTTTAGAGG
ATTATACAATTAATCCATAT

Downstream 100 bases:

>100_bases
AAAAATAAAAAAAAGAAAAAATTAGGAGTTTAGAAACTTGCGATTACTTCTCCTAATAATTTGATGGATTCTTCTACATC
TTTTCCGATTGGAGAACCAG

Product: DNA repair photolyase, SplB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MGCSFDCVYCYINGSKYAKKTNSYYVKSNACDLVYNKLKKLARNHERVFLNFGSASDPYMEIEKELELTREILKIFLRFK
YPVHIITKSDLILRDTDILKKINDAAILPDDLKGLKSKVCVTFSFSTVDDDLASLVEPNAPLPSQRLKAMNTLAKKGFHV
GVALMPILPYINDDLESLENFVKVFRKSNAAYLIPGALSLFGSSEISSRIKYYNFVKSNFPEILDDVKSLFYNREYPSNK
YQNNLYRKVVRICKKQGIKTAMI

Sequences:

>Translated_263_residues
MGCSFDCVYCYINGSKYAKKTNSYYVKSNACDLVYNKLKKLARNHERVFLNFGSASDPYMEIEKELELTREILKIFLRFK
YPVHIITKSDLILRDTDILKKINDAAILPDDLKGLKSKVCVTFSFSTVDDDLASLVEPNAPLPSQRLKAMNTLAKKGFHV
GVALMPILPYINDDLESLENFVKVFRKSNAAYLIPGALSLFGSSEISSRIKYYNFVKSNFPEILDDVKSLFYNREYPSNK
YQNNLYRKVVRICKKQGIKTAMI
>Mature_262_residues
GCSFDCVYCYINGSKYAKKTNSYYVKSNACDLVYNKLKKLARNHERVFLNFGSASDPYMEIEKELELTREILKIFLRFKY
PVHIITKSDLILRDTDILKKINDAAILPDDLKGLKSKVCVTFSFSTVDDDLASLVEPNAPLPSQRLKAMNTLAKKGFHVG
VALMPILPYINDDLESLENFVKVFRKSNAAYLIPGALSLFGSSEISSRIKYYNFVKSNFPEILDDVKSLFYNREYPSNKY
QNNLYRKVVRICKKQGIKTAMI

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 30129; Mature: 29998

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCSFDCVYCYINGSKYAKKTNSYYVKSNACDLVYNKLKKLARNHERVFLNFGSASDPYM
CCCCEEEEEEEECCCHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
EIEKELELTREILKIFLRFKYPVHIITKSDLILRDTDILKKINDAAILPDDLKGLKSKVC
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHHHHHHHCEE
VTFSFSTVDDDLASLVEPNAPLPSQRLKAMNTLAKKGFHVGVALMPILPYINDDLESLEN
EEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHH
FVKVFRKSNAAYLIPGALSLFGSSEISSRIKYYNFVKSNFPEILDDVKSLFYNREYPSNK
HHHHHHCCCCCEECCHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCH
YQNNLYRKVVRICKKQGIKTAMI
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GCSFDCVYCYINGSKYAKKTNSYYVKSNACDLVYNKLKKLARNHERVFLNFGSASDPYM
CCCEEEEEEEECCCHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
EIEKELELTREILKIFLRFKYPVHIITKSDLILRDTDILKKINDAAILPDDLKGLKSKVC
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHHHHHHHCEE
VTFSFSTVDDDLASLVEPNAPLPSQRLKAMNTLAKKGFHVGVALMPILPYINDDLESLEN
EEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHH
FVKVFRKSNAAYLIPGALSLFGSSEISSRIKYYNFVKSNFPEILDDVKSLFYNREYPSNK
HHHHHHCCCCCEECCHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCH
YQNNLYRKVVRICKKQGIKTAMI
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]