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The map label for this gene is atpC

Identifier: 148642497

GI number: 148642497

Start: 417968

End: 419122

Strand: Reverse

Name: atpC

Synonym: Msm_0437

Alternate gene names: 148642497

Gene position: 419122-417968 (Counterclockwise)

Preceding gene: 148642498

Following gene: 148642496

Centisome position: 22.62

GC content: 30.22

Gene sequence:

>1155_bases
ATGGCTGATGAAATTGCAACACTTATTAGTTCAGCAGGTCTTACAAATGAAACTTTCTTAGTTTTATGTGTAATTGCTGT
TATCGTTATAGGTGCAATAGTCGTAATCATTACATCTAGACCAATTTTGGATATTTATCCATATCTTACTCCTAGTGCAA
GCGTACGTGCAAGAAAAGGAAGATTATTTGATGAAAAACAATTATCTGAAATTGTTGAAACAAACAATGTTCACGAATTT
GAAAATTATCTTAAAGGTGTTCCTGATTATGCTGACGTATTAGAAGAATATCCTGTTGATAAAGCATTAGATATTCAATG
TGCTGATACTTATGAATTTGTAGCAAGAATTGCTCCAAAGGAAATTAGAAGTTCTTTTGTTGTAATGTCTAAAAAAACTG
ATATTAATAACATTAAAAGTCTTTTAACTGCTAAAGAAGTTGGCCTTACTGAAGAAGAAACTGAAGATTTATTAATTCCA
CGTGGAGTTTTATATGAAGATTTACGTTCTTTAATTGATGCTGACGGAGTAACTGATGTAGTTACAAGTTTGGACGGCAC
AGAATATGCTGCTGTATTAGAAGATGCTCTTCCAAAATACGAAAATAGTGGTATGGTTCTTGCATTAGAATCTGCTTTAG
ATAAATATTATTTAGAAAGTTTATTACGTTCTTCCAATGTTCCTGCTGATGAAAATAAACAAATTTTATTCTCATATGTT
GGAACTCAAGTAGATATAGCTAATCTTAAATTGATTATAAGGGCAAAAAAAGACAATTTGTCTTATGATGATATTGCTCC
TTATATATTAGAAGACGGTTACCAATTACGTGAATGGAAACTTAAAGATTTAATGGAATCTCCTGATGTTACAAATGTAA
TATCCGGTTTAGAAGGCACTAAATACTCTGATGTATTAACTGATGCTATGGCTAAATATAATGAAAATGCTTCCATTGCA
GTATTTGAAAAAGCTTTAGATGCTTACTTGTCAAAAAGTGCAAAATCTTTATCTATGAAAAAACCATTAGGAATTGGTCC
AATTATTGGTTATGTAAGTCAAAAAGAAACTGAAATTAAAAATTTAAAAATTATTGCAAGAGCAAAAAGAGAAGCTGGAT
TCCCTAACTCTAAAATTATGGAGATGTTAATATGA

Upstream 100 bases:

>100_bases
TTGAAGTAAATAACACTATCGAATCTAGACTAGATAGATTTAAAGGATTATTACGTAGTGAAGTTGCTAATGTTTTATTT
AAAAATTAGGAGGATAAATT

Downstream 100 bases:

>100_bases
GTTCTGTAGCAATTATTGGAGATATTGATGTTGTATCAGGTTTTAGACTTGGTGGAGTTAAAAGAGCAGAAGTAGCTAAT
TCTGCTGAAGAAGCTGTCGC

Product: V-type ATP synthase subunit C

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit C

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MADEIATLISSAGLTNETFLVLCVIAVIVIGAIVVIITSRPILDIYPYLTPSASVRARKGRLFDEKQLSEIVETNNVHEF
ENYLKGVPDYADVLEEYPVDKALDIQCADTYEFVARIAPKEIRSSFVVMSKKTDINNIKSLLTAKEVGLTEEETEDLLIP
RGVLYEDLRSLIDADGVTDVVTSLDGTEYAAVLEDALPKYENSGMVLALESALDKYYLESLLRSSNVPADENKQILFSYV
GTQVDIANLKLIIRAKKDNLSYDDIAPYILEDGYQLREWKLKDLMESPDVTNVISGLEGTKYSDVLTDAMAKYNENASIA
VFEKALDAYLSKSAKSLSMKKPLGIGPIIGYVSQKETEIKNLKIIARAKREAGFPNSKIMEMLI

Sequences:

>Translated_384_residues
MADEIATLISSAGLTNETFLVLCVIAVIVIGAIVVIITSRPILDIYPYLTPSASVRARKGRLFDEKQLSEIVETNNVHEF
ENYLKGVPDYADVLEEYPVDKALDIQCADTYEFVARIAPKEIRSSFVVMSKKTDINNIKSLLTAKEVGLTEEETEDLLIP
RGVLYEDLRSLIDADGVTDVVTSLDGTEYAAVLEDALPKYENSGMVLALESALDKYYLESLLRSSNVPADENKQILFSYV
GTQVDIANLKLIIRAKKDNLSYDDIAPYILEDGYQLREWKLKDLMESPDVTNVISGLEGTKYSDVLTDAMAKYNENASIA
VFEKALDAYLSKSAKSLSMKKPLGIGPIIGYVSQKETEIKNLKIIARAKREAGFPNSKIMEMLI
>Mature_383_residues
ADEIATLISSAGLTNETFLVLCVIAVIVIGAIVVIITSRPILDIYPYLTPSASVRARKGRLFDEKQLSEIVETNNVHEFE
NYLKGVPDYADVLEEYPVDKALDIQCADTYEFVARIAPKEIRSSFVVMSKKTDINNIKSLLTAKEVGLTEEETEDLLIPR
GVLYEDLRSLIDADGVTDVVTSLDGTEYAAVLEDALPKYENSGMVLALESALDKYYLESLLRSSNVPADENKQILFSYVG
TQVDIANLKLIIRAKKDNLSYDDIAPYILEDGYQLREWKLKDLMESPDVTNVISGLEGTKYSDVLTDAMAKYNENASIAV
FEKALDAYLSKSAKSLSMKKPLGIGPIIGYVSQKETEIKNLKIIARAKREAGFPNSKIMEMLI

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1527

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit C

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase V0D/AC39 subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATC_METS3 (A5UKB4)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273010.1
- STRING:   A5UKB4
- GeneID:   5215811
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0437
- eggNOG:   arNOG05775
- HOGENOM:   HBG541187
- OMA:   EWDVRNI
- ProtClustDB:   PRK01198
- HAMAP:   MF_00314
- InterPro:   IPR014272
- InterPro:   IPR002843
- TIGRFAMs:   TIGR02923

Pfam domain/function: PF01992 vATP-synt_AC39; SSF103486 ATPase_V0/A0_c/d

EC number: 3.6.3.14

Molecular weight: Translated: 42622; Mature: 42491

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEIATLISSAGLTNETFLVLCVIAVIVIGAIVVIITSRPILDIYPYLTPSASVRARKG
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHCC
RLFDEKQLSEIVETNNVHEFENYLKGVPDYADVLEEYPVDKALDIQCADTYEFVARIAPK
CCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHHCHH
EIRSSFVVMSKKTDINNIKSLLTAKEVGLTEEETEDLLIPRGVLYEDLRSLIDADGVTDV
HHHHHEEEEECCCCHHHHHHHHHHHHCCCCHHCCHHHCCCCHHHHHHHHHHHCCCCHHHH
VTSLDGTEYAAVLEDALPKYENSGMVLALESALDKYYLESLLRSSNVPADENKQILFSYV
HHHCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHH
GTQVDIANLKLIIRAKKDNLSYDDIAPYILEDGYQLREWKLKDLMESPDVTNVISGLEGT
CCEEEEEEEEEEEEECCCCCCHHHHCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCCC
KYSDVLTDAMAKYNENASIAVFEKALDAYLSKSAKSLSMKKPLGIGPIIGYVSQKETEIK
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHH
NLKIIARAKREAGFPNSKIMEMLI
HHHHHHHHHHHCCCCHHHHHHHHC
>Mature Secondary Structure 
ADEIATLISSAGLTNETFLVLCVIAVIVIGAIVVIITSRPILDIYPYLTPSASVRARKG
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHCC
RLFDEKQLSEIVETNNVHEFENYLKGVPDYADVLEEYPVDKALDIQCADTYEFVARIAPK
CCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHHCHH
EIRSSFVVMSKKTDINNIKSLLTAKEVGLTEEETEDLLIPRGVLYEDLRSLIDADGVTDV
HHHHHEEEEECCCCHHHHHHHHHHHHCCCCHHCCHHHCCCCHHHHHHHHHHHCCCCHHHH
VTSLDGTEYAAVLEDALPKYENSGMVLALESALDKYYLESLLRSSNVPADENKQILFSYV
HHHCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHH
GTQVDIANLKLIIRAKKDNLSYDDIAPYILEDGYQLREWKLKDLMESPDVTNVISGLEGT
CCEEEEEEEEEEEEECCCCCCHHHHCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCCC
KYSDVLTDAMAKYNENASIAVFEKALDAYLSKSAKSLSMKKPLGIGPIIGYVSQKETEIK
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHH
NLKIIARAKREAGFPNSKIMEMLI
HHHHHHHHHHHCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA