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The map label for this gene is 148642485

Identifier: 148642485

GI number: 148642485

Start: 407247

End: 407534

Strand: Reverse

Name: 148642485

Synonym: Msm_0425

Alternate gene names: NA

Gene position: 407534-407247 (Counterclockwise)

Preceding gene: 148642486

Following gene: 148642484

Centisome position: 21.99

GC content: 29.86

Gene sequence:

>288_bases
ATGAAAGTTTTAGGAAATAGTTTGCATATTGCAAATTCTGGAAAATTAATAGCTAGATCATCTAAAACACCTAGTCCTGG
TGGTATTGTTTTTAATAGCGATAAAACTAAAATAGGCAAGGTTAGCTATGTTTTTGGACCTACTAAAAGTCCGTATGTTT
CAATTAAATTATTTAAATCTGCTAATTTAGATAAAATCAAGAGAAACTATGGTGAAAAACTATTTGTATCAAGACCAAAA
TCTAAGAAACCTAGGAAGAGGAGGGTGAAAACACGAAACAAAAAGTAA

Upstream 100 bases:

>100_bases
TAAATAGCAAATTTTATTGATATATAAATATATCGATACATTTATATATTATCACATGCATATTAATAGTTGATACAGAT
TATTTTATGATTGATTTTTT

Downstream 100 bases:

>100_bases
ACGAAATCCCTAAAAAGGTCGGACATAAAAGAACAGAAAAAGAAATTATGCAAGGTGATGTTTATGATAAAGATAAACAA
ACCGTATGTCCGGAATGTGG

Product: H/ACA RNA-protein complex component Gar1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MKVLGNSLHIANSGKLIARSSKTPSPGGIVFNSDKTKIGKVSYVFGPTKSPYVSIKLFKSANLDKIKRNYGEKLFVSRPK
SKKPRKRRVKTRNKK

Sequences:

>Translated_95_residues
MKVLGNSLHIANSGKLIARSSKTPSPGGIVFNSDKTKIGKVSYVFGPTKSPYVSIKLFKSANLDKIKRNYGEKLFVSRPK
SKKPRKRRVKTRNKK
>Mature_95_residues
MKVLGNSLHIANSGKLIARSSKTPSPGGIVFNSDKTKIGKVSYVFGPTKSPYVSIKLFKSANLDKIKRNYGEKLFVSRPK
SKKPRKRRVKTRNKK

Specific function: Unknown

COG id: COG3277

COG function: function code J; RNA-binding protein involved in rRNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0782.1 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007504
- InterPro:   IPR020321
- InterPro:   IPR021154
- InterPro:   IPR009000
- ProDom:   PD064583 [H]

Pfam domain/function: PF04410 Gar1 [H]

EC number: NA

Molecular weight: Translated: 10634; Mature: 10634

Theoretical pI: Translated: 11.91; Mature: 11.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLGNSLHIANSGKLIARSSKTPSPGGIVFNSDKTKIGKVSYVFGPTKSPYVSIKLFKS
CCCCCCEEEECCCCCEEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCCCEEEEEEECC
ANLDKIKRNYGEKLFVSRPKSKKPRKRRVKTRNKK
CCHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MKVLGNSLHIANSGKLIARSSKTPSPGGIVFNSDKTKIGKVSYVFGPTKSPYVSIKLFKS
CCCCCCEEEECCCCCEEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCCCEEEEEEECC
ANLDKIKRNYGEKLFVSRPKSKKPRKRRVKTRNKK
CCHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]