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The map label for this gene is rpl15e [H]

Identifier: 148642358

GI number: 148642358

Start: 288214

End: 288768

Strand: Reverse

Name: rpl15e [H]

Synonym: Msm_0298

Alternate gene names: 148642358

Gene position: 288768-288214 (Counterclockwise)

Preceding gene: 148642365

Following gene: 148642357

Centisome position: 15.58

GC content: 35.68

Gene sequence:

>555_bases
ATGTATAAATATATTAGAGATGCATGGAAAAACCCAGATGAATCCTATGTAAGGGAATTAATGTGGGAAAGAGCTCCTAA
ATGGAGAAGGCAATCAGCAGTTCAAAGAATTGAAAGACCAACCAGGCTTGATAGAGCTAGAAGTTTAGGTTACAGAGCTA
AAAAAGGTTTCGTTTTAGTAAGAACCAGAGTAAGACGTGGTGGAAGAAGGAAATCTCGTTTTATCGGAGGACGTAAACCT
AAAAGAATGGGTGTAAACAAAATTACCCAAGCTAAATCCATTCAAAGGATTGCTGAAGAACGTGTAGCTAAAAAATACCC
TAATTTAGAAGTATTAAACTCTTACTGGGTATGGGCTGACGGTAAATATAAATATTATGAAGTTATTTTAGTAGATCCAC
AAAGTCCTTCTATTGTTAATGATGAAAAAATCAATTGGATTTGCTCCAAAAAACACACTAACAGAGCTCTCAGAGGCTTA
ACTAGTGCTGGAACTAAAGGACGTGGATTAACTTCCAAAGGAAAAGGTAGTGAACAAGCAAGGAGAAAAAAATAA

Upstream 100 bases:

>100_bases
ATATTTTATTATCGTTGATTTATTGACGATTACATAACTTTTTTCGAGACAATGTCTCATGGATGTGGCTTTTTAAAAAA
GCTGAACAAAAGGTGTTATT

Downstream 100 bases:

>100_bases
ATCTCCTTTCTTAATACCTTTTTTGATAAAATGATTCATAATATCAGATTTAGAGAGTTTGTTTATGAGAGTGAAAATCT
CGATGAATTAACTCAGGCCA

Product: 50S ribosomal protein L15e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MYKYIRDAWKNPDESYVRELMWERAPKWRRQSAVQRIERPTRLDRARSLGYRAKKGFVLVRTRVRRGGRRKSRFIGGRKP
KRMGVNKITQAKSIQRIAEERVAKKYPNLEVLNSYWVWADGKYKYYEVILVDPQSPSIVNDEKINWICSKKHTNRALRGL
TSAGTKGRGLTSKGKGSEQARRKK

Sequences:

>Translated_184_residues
MYKYIRDAWKNPDESYVRELMWERAPKWRRQSAVQRIERPTRLDRARSLGYRAKKGFVLVRTRVRRGGRRKSRFIGGRKP
KRMGVNKITQAKSIQRIAEERVAKKYPNLEVLNSYWVWADGKYKYYEVILVDPQSPSIVNDEKINWICSKKHTNRALRGL
TSAGTKGRGLTSKGKGSEQARRKK
>Mature_184_residues
MYKYIRDAWKNPDESYVRELMWERAPKWRRQSAVQRIERPTRLDRARSLGYRAKKGFVLVRTRVRRGGRRKSRFIGGRKP
KRMGVNKITQAKSIQRIAEERVAKKYPNLEVLNSYWVWADGKYKYYEVILVDPQSPSIVNDEKINWICSKKHTNRALRGL
TSAGTKGRGLTSKGKGSEQARRKK

Specific function: Unknown

COG id: COG1632

COG function: function code J; Ribosomal protein L15E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L15e family [H]

Homologues:

Organism=Homo sapiens, GI15431293, Length=179, Percent_Identity=46.3687150837989, Blast_Score=151, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI17541432, Length=177, Percent_Identity=47.4576271186441, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6323057, Length=186, Percent_Identity=44.6236559139785, Blast_Score=150, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6323769, Length=186, Percent_Identity=44.6236559139785, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000439
- InterPro:   IPR020926
- InterPro:   IPR020925
- InterPro:   IPR012678 [H]

Pfam domain/function: PF00827 Ribosomal_L15e [H]

EC number: NA

Molecular weight: Translated: 21655; Mature: 21655

Theoretical pI: Translated: 11.62; Mature: 11.62

Prosite motif: PS01194 RIBOSOMAL_L15E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKYIRDAWKNPDESYVRELMWERAPKWRRQSAVQRIERPTRLDRARSLGYRAKKGFVLV
CCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEE
RTRVRRGGRRKSRFIGGRKPKRMGVNKITQAKSIQRIAEERVAKKYPNLEVLNSYWVWAD
EHHHHCCCCHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEC
GKYKYYEVILVDPQSPSIVNDEKINWICSKKHTNRALRGLTSAGTKGRGLTSKGKGSEQA
CCEEEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
RRKK
HCCC
>Mature Secondary Structure
MYKYIRDAWKNPDESYVRELMWERAPKWRRQSAVQRIERPTRLDRARSLGYRAKKGFVLV
CCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEE
RTRVRRGGRRKSRFIGGRKPKRMGVNKITQAKSIQRIAEERVAKKYPNLEVLNSYWVWAD
EHHHHCCCCHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEC
GKYKYYEVILVDPQSPSIVNDEKINWICSKKHTNRALRGLTSAGTKGRGLTSKGKGSEQA
CCEEEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
RRKK
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]