Click here to switch to the map view.

The map label for this gene is 148642320

Identifier: 148642320

GI number: 148642320

Start: 242540

End: 244798

Strand: Reverse

Name: 148642320

Synonym: Msm_0260

Alternate gene names: NA

Gene position: 244798-242540 (Counterclockwise)

Preceding gene: 148642321

Following gene: 148642319

Centisome position: 13.21

GC content: 35.33

Gene sequence:

>2259_bases
TTGAAAAAAAAGTGTCCAAAATGTAGAGGAACAGGTTCTGTAGTTGTAGATTATAAAGACTGTGATAGCTGTGGCGGAAC
TGGTTACCAAGATTCCTTTGATGTAGGAAATCATTTTAAAGGAGTTAATAGTAATGCGAAAGCTAAATTTGATTTAGGGG
CAGATCAGGATATTCCATGTGAAGTTTGTCATGGAAAAGGTCAGATTGAAGTTTTTGAAGAATGTCCTAATTGTCATGGC
AGCGGTCAGATTAATGTATGTAATGACTGCGGCAAACCAATCAGTGAAAAATATGATTTATGTAGAGATTGCCATACCAA
AAGGAAGGAAGATAGAATGAAACGTGATAAAATACGGGAGATGGAAAACGAAGTTAAAGATGTTTATGTCTTGGATTCAT
TATGTCAAATGAGGGATATGGACAAGGATAGACTTTATAAAGGCAGAGTTACCCGTGTTGAAAAATATGGTGCTTTTGTA
ACATTAAATAATAATGTCTGGGGACTTATGAGGGGAGATATCTCTAATTATAAAGTTGGAGATGATGTTATTGTATTTAT
AACAGCTATTAAATCAAGGGAAAGAAAAATTGATTTGGCTCCAGCATATGTTAAAAATTACAATATTGTAAAACAGACAA
AAAGCATTCCAAGAACCATTATTTCTGATCTGGAAGAAAAAATGGGCAAATTGGTTCGTGTTGACGGTGAAGTTCTACAG
GTTCAGCAAACTTCAGGACCGACTATTTTTACAATTACTGATGAATCAAATATTACATGGGTAGCTGCTTTTGATGAAGC
TGGAGTTAGAGCATATCCAGATATTGATGTTGGGGATGCTGTGGAAGTTTTAGGTGAAGTTAATCAGCATGGAGGCAAGC
CTCAAATTGAATCTCAGTCTATTTCCAAATTGGAAGGTGAGAAAAAAGCCAAACTTCATGATTTAATTGAAGATGCATTA
AATAAAAGGGCAGAACCTGATGATGTTGATTTCCTGGTTAAAAGTGATGTTTTAAACAGATTGAAACCTAAAATGAGGGA
AGCAGCTCAAAAAATTAGGAGAGCTATTTTAGATGGCAGATCTATTTTATTAAGACATCATAACGATGCAGACGGTATCT
GTTCAGGAGTAGCTATGGAAAAAGCTATTGTTCCTCTTGTCGAACAGGTAAATCCAAGTAATGATGCTCAGTATTATTAT
TTCAAAAGATCTCCAAGTAAAGCTCCATTTTATGAATTGGAAGATGTAGTTAAGGATTTGTCCTTTGCTCTTGAAGACAA
GGAAAGACACGGTCAAAAATTGCCGTTAATTGTTTTGCTGGATAATGGTTCTACAGAAGAGGACATTGTAGCTTTGATGC
AGGCTAAAATTTATGATGTGGAAGTTGTAGTAATAGACCATCACTCTCCTGGAGATTTAATTACTAAAGAGGAAAAAGAC
GGGGAAATTGTTGGCGGAACTGTTGCTGTTGATGAATATGTTGACACTCATGTAAACCCTTATCTGGTTGGAGGAGATTC
TCAGCTAACTGCAGGAGCACTGGCTACTGAAGTGGCACATATTATAAATCCTGAAATTAAAGATTTAATCAAACATCTTC
CGGCTATTGCAGCTTTGGGAGATCATGCTGAATGTGGTGAAGTTTACCAATACCTTGAATTGGCAGCAGAAAAAGGATTT
ACTAAAGAACATTTAGCTAAAATAGCCGAATGTGTTGACTTTGAAGCTTATTTCCTTAGGTTCATGAATGGTAGGGGAAT
TATGGACACTATTTTAGCTGTTGACAATATTGATAAGCATGAAAAGATGATTGATTCTTTATACAAGGAATATTTAAAAC
GTGTTGACACTCAGCTTAAAGCAGCTATTCCTAATATTGAAAAAACTCATTTTGAGAATGGCATTTACTTCAATATGATT
GATGTTGAAAAATATGCTCATAAATTTACATTCCCTGCTCCTGGAAAAACCTGTGGTTTTGTTCATGATAGTGTAGTTCA
GGCATTAGGTGAGGATAAACCAATTATAACTTTAGGACATGGTCCTGATTTTGGTGTAATAAGAGCTACTGATGCTGTTA
ATGAAAGATTTGGATTTAGCGTCAATAATATTGTTCCTAAACTGGCTGAAATGATACCTTCAGCAGGTATTGACGGCGGA
GGCCATGAATGTGCCGGATCTATAAAATACATTGAAGGTTTAGGGGAAGAAGTTTTAAGTGAATTTGTTAATGAAATAAG
AAATATGAGTGAACTTTAA

Upstream 100 bases:

>100_bases
TGGATGAAGCTATTCAGTATCAAAATGCAAGAAATAAGTTAGTTAATGATAATCCAAATTTATTTAGATAAAATTTTTAC
TTTAAAATGAGGTTTTTAAA

Downstream 100 bases:

>100_bases
AATGAAATATTGTCCTAAATGCGGTTTTGAAAATGCTAATTATGCCAAATTTTGTGTAAAATGTGGCAATTCTTTTGTTG
ACATGGACATTAATACAATT

Product: RecJ-like exonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 752; Mature: 752

Protein sequence:

>752_residues
MKKKCPKCRGTGSVVVDYKDCDSCGGTGYQDSFDVGNHFKGVNSNAKAKFDLGADQDIPCEVCHGKGQIEVFEECPNCHG
SGQINVCNDCGKPISEKYDLCRDCHTKRKEDRMKRDKIREMENEVKDVYVLDSLCQMRDMDKDRLYKGRVTRVEKYGAFV
TLNNNVWGLMRGDISNYKVGDDVIVFITAIKSRERKIDLAPAYVKNYNIVKQTKSIPRTIISDLEEKMGKLVRVDGEVLQ
VQQTSGPTIFTITDESNITWVAAFDEAGVRAYPDIDVGDAVEVLGEVNQHGGKPQIESQSISKLEGEKKAKLHDLIEDAL
NKRAEPDDVDFLVKSDVLNRLKPKMREAAQKIRRAILDGRSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYY
FKRSPSKAPFYELEDVVKDLSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVVIDHHSPGDLITKEEKD
GEIVGGTVAVDEYVDTHVNPYLVGGDSQLTAGALATEVAHIINPEIKDLIKHLPAIAALGDHAECGEVYQYLELAAEKGF
TKEHLAKIAECVDFEAYFLRFMNGRGIMDTILAVDNIDKHEKMIDSLYKEYLKRVDTQLKAAIPNIEKTHFENGIYFNMI
DVEKYAHKFTFPAPGKTCGFVHDSVVQALGEDKPIITLGHGPDFGVIRATDAVNERFGFSVNNIVPKLAEMIPSAGIDGG
GHECAGSIKYIEGLGEEVLSEFVNEIRNMSEL

Sequences:

>Translated_752_residues
MKKKCPKCRGTGSVVVDYKDCDSCGGTGYQDSFDVGNHFKGVNSNAKAKFDLGADQDIPCEVCHGKGQIEVFEECPNCHG
SGQINVCNDCGKPISEKYDLCRDCHTKRKEDRMKRDKIREMENEVKDVYVLDSLCQMRDMDKDRLYKGRVTRVEKYGAFV
TLNNNVWGLMRGDISNYKVGDDVIVFITAIKSRERKIDLAPAYVKNYNIVKQTKSIPRTIISDLEEKMGKLVRVDGEVLQ
VQQTSGPTIFTITDESNITWVAAFDEAGVRAYPDIDVGDAVEVLGEVNQHGGKPQIESQSISKLEGEKKAKLHDLIEDAL
NKRAEPDDVDFLVKSDVLNRLKPKMREAAQKIRRAILDGRSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYY
FKRSPSKAPFYELEDVVKDLSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVVIDHHSPGDLITKEEKD
GEIVGGTVAVDEYVDTHVNPYLVGGDSQLTAGALATEVAHIINPEIKDLIKHLPAIAALGDHAECGEVYQYLELAAEKGF
TKEHLAKIAECVDFEAYFLRFMNGRGIMDTILAVDNIDKHEKMIDSLYKEYLKRVDTQLKAAIPNIEKTHFENGIYFNMI
DVEKYAHKFTFPAPGKTCGFVHDSVVQALGEDKPIITLGHGPDFGVIRATDAVNERFGFSVNNIVPKLAEMIPSAGIDGG
GHECAGSIKYIEGLGEEVLSEFVNEIRNMSEL
>Mature_752_residues
MKKKCPKCRGTGSVVVDYKDCDSCGGTGYQDSFDVGNHFKGVNSNAKAKFDLGADQDIPCEVCHGKGQIEVFEECPNCHG
SGQINVCNDCGKPISEKYDLCRDCHTKRKEDRMKRDKIREMENEVKDVYVLDSLCQMRDMDKDRLYKGRVTRVEKYGAFV
TLNNNVWGLMRGDISNYKVGDDVIVFITAIKSRERKIDLAPAYVKNYNIVKQTKSIPRTIISDLEEKMGKLVRVDGEVLQ
VQQTSGPTIFTITDESNITWVAAFDEAGVRAYPDIDVGDAVEVLGEVNQHGGKPQIESQSISKLEGEKKAKLHDLIEDAL
NKRAEPDDVDFLVKSDVLNRLKPKMREAAQKIRRAILDGRSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYY
FKRSPSKAPFYELEDVVKDLSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVVIDHHSPGDLITKEEKD
GEIVGGTVAVDEYVDTHVNPYLVGGDSQLTAGALATEVAHIINPEIKDLIKHLPAIAALGDHAECGEVYQYLELAAEKGF
TKEHLAKIAECVDFEAYFLRFMNGRGIMDTILAVDNIDKHEKMIDSLYKEYLKRVDTQLKAAIPNIEKTHFENGIYFNMI
DVEKYAHKFTFPAPGKTCGFVHDSVVQALGEDKPIITLGHGPDFGVIRATDAVNERFGFSVNNIVPKLAEMIPSAGIDGG
GHECAGSIKYIEGLGEEVLSEFVNEIRNMSEL

Specific function: Unknown

COG id: COG1107

COG function: function code L; Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001305
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR001667
- InterPro:   IPR003029
- InterPro:   IPR022967 [H]

Pfam domain/function: PF01368 DHH; PF00575 S1; PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 83720; Mature: 83720

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKCPKCRGTGSVVVDYKDCDSCGGTGYQDSFDVGNHFKGVNSNAKAKFDLGADQDIPC
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCH
EVCHGKGQIEVFEECPNCHGSGQINVCNDCGKPISEKYDLCRDCHTKRKEDRMKRDKIRE
HHHCCCCCEEHHHHCCCCCCCCCEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MENEVKDVYVLDSLCQMRDMDKDRLYKGRVTRVEKYGAFVTLNNNVWGLMRGDISNYKVG
HHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHEEECCCEEEEECCCEEEEEECCCCCCCCC
DDVIVFITAIKSRERKIDLAPAYVKNYNIVKQTKSIPRTIISDLEEKMGKLVRVDGEVLQ
CCEEEEEEEHHCCCCEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEE
VQQTSGPTIFTITDESNITWVAAFDEAGVRAYPDIDVGDAVEVLGEVNQHGGKPQIESQS
EEECCCCEEEEEECCCCEEEEEEECCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHH
ISKLEGEKKAKLHDLIEDALNKRAEPDDVDFLVKSDVLNRLKPKMREAAQKIRRAILDGR
HHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYYFKRSPSKAPFYELEDVVKDL
EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
SFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVVIDHHSPGDLITKEEKD
HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCC
GEIVGGTVAVDEYVDTHVNPYLVGGDSQLTAGALATEVAHIINPEIKDLIKHLPAIAALG
CCEECCEEEEHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
DHAECGEVYQYLELAAEKGFTKEHLAKIAECVDFEAYFLRFMNGRGIMDTILAVDNIDKH
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
EKMIDSLYKEYLKRVDTQLKAAIPNIEKTHFENGIYFNMIDVEKYAHKFTFPAPGKTCGF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEEHHHHHHHCCCCCCCCCCCH
VHDSVVQALGEDKPIITLGHGPDFGVIRATDAVNERFGFSVNNIVPKLAEMIPSAGIDGG
HHHHHHHHHCCCCCEEEECCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
GHECAGSIKYIEGLGEEVLSEFVNEIRNMSEL
CHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKKCPKCRGTGSVVVDYKDCDSCGGTGYQDSFDVGNHFKGVNSNAKAKFDLGADQDIPC
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCH
EVCHGKGQIEVFEECPNCHGSGQINVCNDCGKPISEKYDLCRDCHTKRKEDRMKRDKIRE
HHHCCCCCEEHHHHCCCCCCCCCEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MENEVKDVYVLDSLCQMRDMDKDRLYKGRVTRVEKYGAFVTLNNNVWGLMRGDISNYKVG
HHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHEEECCCEEEEECCCEEEEEECCCCCCCCC
DDVIVFITAIKSRERKIDLAPAYVKNYNIVKQTKSIPRTIISDLEEKMGKLVRVDGEVLQ
CCEEEEEEEHHCCCCEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEE
VQQTSGPTIFTITDESNITWVAAFDEAGVRAYPDIDVGDAVEVLGEVNQHGGKPQIESQS
EEECCCCEEEEEECCCCEEEEEEECCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHH
ISKLEGEKKAKLHDLIEDALNKRAEPDDVDFLVKSDVLNRLKPKMREAAQKIRRAILDGR
HHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYYFKRSPSKAPFYELEDVVKDL
EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
SFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVVIDHHSPGDLITKEEKD
HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCC
GEIVGGTVAVDEYVDTHVNPYLVGGDSQLTAGALATEVAHIINPEIKDLIKHLPAIAALG
CCEECCEEEEHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
DHAECGEVYQYLELAAEKGFTKEHLAKIAECVDFEAYFLRFMNGRGIMDTILAVDNIDKH
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
EKMIDSLYKEYLKRVDTQLKAAIPNIEKTHFENGIYFNMIDVEKYAHKFTFPAPGKTCGF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEEHHHHHHHCCCCCCCCCCCH
VHDSVVQALGEDKPIITLGHGPDFGVIRATDAVNERFGFSVNNIVPKLAEMIPSAGIDGG
HHHHHHHHHCCCCCEEEECCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
GHECAGSIKYIEGLGEEVLSEFVNEIRNMSEL
CHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]