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The map label for this gene is rpl7ae

Identifier: 148642266

GI number: 148642266

Start: 196021

End: 196392

Strand: Reverse

Name: rpl7ae

Synonym: Msm_0206

Alternate gene names: 148642266

Gene position: 196392-196021 (Counterclockwise)

Preceding gene: 148642272

Following gene: 148642265

Centisome position: 10.6

GC content: 38.71

Gene sequence:

>372_bases
ATGGCAAAAGCAATTTATGTAAAATTTGATACACCTGAAGAATTAGCTAATCAAGCTGAAGAAGCATTAAAAACCGCACA
AGACAGTGGTAAAGTAGCAAAAGGAACTAACGAAGTAACTAAATTTATCGAAAGAGGAGACGCAGCACTTGTTGTTATCG
CAGAAGATGTTGATCCTGCTGAAATTGTTGCACACATCCCTGTTCTCGCTGATGAAAAAGAAATTCCTTACATTTACTTA
CCTACTAAAGAACAAGTTGGTGGAGCTGCAGGTTTAACTGTCGGTACCGCATCCGCTTGTATTGTTGACGCTGGAGATGC
TGAAGGCGACGTAGCTGAAATTGTTGAAAAAATCGCAGAATTAAAAGAATAA

Upstream 100 bases:

>100_bases
TAAAATAATATAACTATATATAATTACGAATATTATAATTCAAGGAATTATAATATCTGCCGATGGATGGCATAGCCAGA
TGAAAAAGGAGGTATATATT

Downstream 100 bases:

>100_bases
ATCTTCTTTTTGAGGATTAAAAGGTGATTTATATGGAAGAAGCTACTCCTGCTGAAGTCATTAATGTTTTAAAAAGAACT
GGTATGACTGGAGAGGTTAT

Product: 50S ribosomal protein L7Ae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MAKAIYVKFDTPEELANQAEEALKTAQDSGKVAKGTNEVTKFIERGDAALVVIAEDVDPAEIVAHIPVLADEKEIPYIYL
PTKEQVGGAAGLTVGTASACIVDAGDAEGDVAEIVEKIAELKE

Sequences:

>Translated_123_residues
MAKAIYVKFDTPEELANQAEEALKTAQDSGKVAKGTNEVTKFIERGDAALVVIAEDVDPAEIVAHIPVLADEKEIPYIYL
PTKEQVGGAAGLTVGTASACIVDAGDAEGDVAEIVEKIAELKE
>Mature_122_residues
AKAIYVKFDTPEELANQAEEALKTAQDSGKVAKGTNEVTKFIERGDAALVVIAEDVDPAEIVAHIPVLADEKEIPYIYLP
TKEQVGGAAGLTVGTASACIVDAGDAEGDVAEIVEKIAELKE

Specific function: Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs

COG id: COG1358

COG function: function code J; Ribosomal protein HS6-type (S12/L30/L7a)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L7Ae family

Homologues:

Organism=Homo sapiens, GI8923444, Length=79, Percent_Identity=32.9113924050633, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI4826860, Length=80, Percent_Identity=31.25, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI51317376, Length=80, Percent_Identity=31.25, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17555988, Length=109, Percent_Identity=32.1100917431193, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6319993, Length=98, Percent_Identity=33.6734693877551, Blast_Score=74, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6320809, Length=109, Percent_Identity=30.2752293577982, Blast_Score=69, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17864298, Length=71, Percent_Identity=39.4366197183099, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL7A_METS3 (A5UJN3)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001272779.1
- ProteinModelPortal:   A5UJN3
- SMR:   A5UJN3
- STRING:   A5UJN3
- GeneID:   5216819
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0206
- eggNOG:   arNOG10239
- HOGENOM:   HBG739027
- OMA:   GTNEATK
- ProtClustDB:   PRK04175
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00326
- InterPro:   IPR004038
- InterPro:   IPR018492
- InterPro:   IPR022481
- InterPro:   IPR000948
- PRINTS:   PR00881
- PRINTS:   PR00884
- TIGRFAMs:   TIGR03677

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 12912; Mature: 12780

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: PS01082 RIBOSOMAL_L7AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAIYVKFDTPEELANQAEEALKTAQDSGKVAKGTNEVTKFIERGDAALVVIAEDVDPA
CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEECCCCHH
EIVAHIPVLADEKEIPYIYLPTKEQVGGAAGLTVGTASACIVDAGDAEGDVAEIVEKIAE
HHHHHCCCEECCCCCCEEEECCHHHCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHH
LKE
HCC
>Mature Secondary Structure 
AKAIYVKFDTPEELANQAEEALKTAQDSGKVAKGTNEVTKFIERGDAALVVIAEDVDPA
CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEECCCCHH
EIVAHIPVLADEKEIPYIYLPTKEQVGGAAGLTVGTASACIVDAGDAEGDVAEIVEKIAE
HHHHHCCCEECCCCCCEEEECCHHHCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHH
LKE
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA