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The map label for this gene is yprB [H]

Identifier: 148642198

GI number: 148642198

Start: 133363

End: 134418

Strand: Reverse

Name: yprB [H]

Synonym: Msm_0138

Alternate gene names: 148642198

Gene position: 134418-133363 (Counterclockwise)

Preceding gene: 148642202

Following gene: 148642197

Centisome position: 7.25

GC content: 33.71

Gene sequence:

>1056_bases
ATGACACAAAGAGAAGAACACGAAAGGTATTTGTTGGAAGCGATATTGTCAGATTCAATATCTTCAGATAATCCTTCTGA
AAAAGCTAAAGAAAAAGCTAGGAAAAATTCACCATCTTATTTTAAGGCATTGGAAGAAAATCTTCTGGTTAAATATGAAA
ATAAAAAGCTGTCAGATATTAGCGGAAGTAAAATAATTGATACTGATGCAGGTGAAACATTATGTATAACTGAAAGTGAA
AAAATAAACTTCAAATTAGCTGAAAATAATTTTAAACAACAAATGAACCACAACCTTAAACTGCTTCCGAAAATAGGCAT
TAAAACAGAACAGAACCTTAAAAATGCAGGATACGACACCATTGAATCACTTACTGCTCATGACAGATACGGATCATATG
CTGACAGATTCATGGCCAGTATTGATGAGATGTCATTTAGGGATGTTTTAAGACTGCTGAACAAAAACAAGTACGGCAAA
AAGTGCAGGGACAATCTAATAAAGTATGCAAGTATTCCTGATGCGGAAAACTTTAAATTTATGGATATCGAAACATTGGG
TTTATCAAATGTTCCGGTTATTCTGATTGGTGTAGCTGAAATCAAAAACAACAAAATAACCTCTTCACAATATTTCTTAA
GAGACATTTATGAGGAACCTGCAGTTTTGGAAGCTTATCTGTCTCATTTGGATGATGATTCTATTCATGTAACCTTCAAC
GGATCAATGTTTGATGTTCCCTTTATTAAAAATAGGTGCAGCTATTACAGAATGAATCCTCAGCTGGATTTGCCTCATCT
TGATTTATTGTATTTTGCAAGAAATCTGTGGAAAAATACTCTGCCTAACTGTCAACTTCAAACAATTGAAAAAGAAATCT
TTGGAATTGAAAGAAAAGATGACGTTCCAGGCCAGTACATTCCGGGATATTATCAAACATACTTGACTGAAAGGAATATA
GGGCCGATAGTTCCAATTATAGAACACAACAGACAGGATATTGTTTCCCTGGCCAGCTTTTTGATGAAAATGTATGATAT
AGTAAATGAAAGCTGA

Upstream 100 bases:

>100_bases
AATATTGTATCAATCTACTATATAAACTTATTTATATTTTATTAAAATTCAATTATACTTTAATTAATAATATATACAAT
AAATGACTAAATTAATGTAA

Downstream 100 bases:

>100_bases
TGATTTTTACAGGATATGTTTGTAAAATAAACTATTTTTATTATAAAATATAATAATTATCAAATGAGGAATTACAATGG
GATTTTTTGATAGATTTAAA

Product: exonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTQREEHERYLLEAILSDSISSDNPSEKAKEKARKNSPSYFKALEENLLVKYENKKLSDISGSKIIDTDAGETLCITESE
KINFKLAENNFKQQMNHNLKLLPKIGIKTEQNLKNAGYDTIESLTAHDRYGSYADRFMASIDEMSFRDVLRLLNKNKYGK
KCRDNLIKYASIPDAENFKFMDIETLGLSNVPVILIGVAEIKNNKITSSQYFLRDIYEEPAVLEAYLSHLDDDSIHVTFN
GSMFDVPFIKNRCSYYRMNPQLDLPHLDLLYFARNLWKNTLPNCQLQTIEKEIFGIERKDDVPGQYIPGYYQTYLTERNI
GPIVPIIEHNRQDIVSLASFLMKMYDIVNES

Sequences:

>Translated_351_residues
MTQREEHERYLLEAILSDSISSDNPSEKAKEKARKNSPSYFKALEENLLVKYENKKLSDISGSKIIDTDAGETLCITESE
KINFKLAENNFKQQMNHNLKLLPKIGIKTEQNLKNAGYDTIESLTAHDRYGSYADRFMASIDEMSFRDVLRLLNKNKYGK
KCRDNLIKYASIPDAENFKFMDIETLGLSNVPVILIGVAEIKNNKITSSQYFLRDIYEEPAVLEAYLSHLDDDSIHVTFN
GSMFDVPFIKNRCSYYRMNPQLDLPHLDLLYFARNLWKNTLPNCQLQTIEKEIFGIERKDDVPGQYIPGYYQTYLTERNI
GPIVPIIEHNRQDIVSLASFLMKMYDIVNES
>Mature_350_residues
TQREEHERYLLEAILSDSISSDNPSEKAKEKARKNSPSYFKALEENLLVKYENKKLSDISGSKIIDTDAGETLCITESEK
INFKLAENNFKQQMNHNLKLLPKIGIKTEQNLKNAGYDTIESLTAHDRYGSYADRFMASIDEMSFRDVLRLLNKNKYGKK
CRDNLIKYASIPDAENFKFMDIETLGLSNVPVILIGVAEIKNNKITSSQYFLRDIYEEPAVLEAYLSHLDDDSIHVTFNG
SMFDVPFIKNRCSYYRMNPQLDLPHLDLLYFARNLWKNTLPNCQLQTIEKEIFGIERKDDVPGQYIPGYYQTYLTERNIG
PIVPIIEHNRQDIVSLASFLMKMYDIVNES

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40607; Mature: 40475

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQREEHERYLLEAILSDSISSDNPSEKAKEKARKNSPSYFKALEENLLVKYENKKLSDI
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCEEEECCCCCCCC
SGSKIIDTDAGETLCITESEKINFKLAENNFKQQMNHNLKLLPKIGIKTEQNLKNAGYDT
CCCEEEECCCCCEEEEECCCCEEEEECCHHHHHHHCCCEEEEECCCCCCHHHHHHCCHHH
IESLTAHDRYGSYADRFMASIDEMSFRDVLRLLNKNKYGKKCRDNLIKYASIPDAENFKF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEE
MDIETLGLSNVPVILIGVAEIKNNKITSSQYFLRDIYEEPAVLEAYLSHLDDDSIHVTFN
EEEEECCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEC
GSMFDVPFIKNRCSYYRMNPQLDLPHLDLLYFARNLWKNTLPNCQLQTIEKEIFGIERKD
CCEEECHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
DVPGQYIPGYYQTYLTERNIGPIVPIIEHNRQDIVSLASFLMKMYDIVNES
CCCCCCCCHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQREEHERYLLEAILSDSISSDNPSEKAKEKARKNSPSYFKALEENLLVKYENKKLSDI
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCEEEECCCCCCCC
SGSKIIDTDAGETLCITESEKINFKLAENNFKQQMNHNLKLLPKIGIKTEQNLKNAGYDT
CCCEEEECCCCCEEEEECCCCEEEEECCHHHHHHHCCCEEEEECCCCCCHHHHHHCCHHH
IESLTAHDRYGSYADRFMASIDEMSFRDVLRLLNKNKYGKKCRDNLIKYASIPDAENFKF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEE
MDIETLGLSNVPVILIGVAEIKNNKITSSQYFLRDIYEEPAVLEAYLSHLDDDSIHVTFN
EEEEECCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEC
GSMFDVPFIKNRCSYYRMNPQLDLPHLDLLYFARNLWKNTLPNCQLQTIEKEIFGIERKD
CCEEECHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
DVPGQYIPGYYQTYLTERNIGPIVPIIEHNRQDIVSLASFLMKMYDIVNES
CCCCCCCCHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906 [H]