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The map label for this gene is yvdD [H]

Identifier: 148642064

GI number: 148642064

Start: 4423

End: 4965

Strand: Reverse

Name: yvdD [H]

Synonym: Msm_0004

Alternate gene names: 148642064

Gene position: 4965-4423 (Counterclockwise)

Preceding gene: 148642065

Following gene: 148642063

Centisome position: 0.27

GC content: 35.54

Gene sequence:

>543_bases
ATGAAAATTACGGTATATCTTGGATCACATGAAGGCAGTGACCCCTTTCTAAAAGAAGCTGTAAGGGAACTTGGTGTGTG
GATTGCTGAAAATAATCATATACTTGTTTATGGCGGTTCAAAAATAGGATTGATGGGGGAACTTGCAGACAGTGTTCTGA
ATGCTGAAGGTATGGCAATTGGTGTTGAACCTGAGTTTTTTATAGACGATAACCTGCACCATGAAAATTTAAGCGAACTT
ATAATAACCAGTGATTTGCAGGATCGGAAAAGGAAAATGATTGAGCTTGGAGATGCTTTCATTGCTTTTCCGGGAGGTAC
AGGTACTTTAGATGAAATAACTGAAATAATGACTAAAGTTGCCCTAAAACAGATAAATGCTCCATGTATTGTATATAATC
TTAATGGTTATTATGATAGCCTGAAAGTTCTTTTGGACCATATGATTGAAATGGGATTGTCCACATCAGATAAGCAGGAA
AAAATCTATTTTGCCAATAATCTTTTGGAAATAGATGGGATTTTAACTGATGCTAATGAATAA

Upstream 100 bases:

>100_bases
TTTTAAGCATGGTGTAATTATACCTGTAATTTCATTTATATTATTTATTTTTGGAATTTAAGAGAATTTGAAGCATATAT
AACATAATAGGTGTAACTTA

Downstream 100 bases:

>100_bases
TATGTGTTTAAATAGTATAAACAATATAATAATATTGTAAGTATGATATTTTTTATTATATTTTAAATATGTAATTTTGG
TGACAAGATGGACAATGAAA

Product: lysine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKITVYLGSHEGSDPFLKEAVRELGVWIAENNHILVYGGSKIGLMGELADSVLNAEGMAIGVEPEFFIDDNLHHENLSEL
IITSDLQDRKRKMIELGDAFIAFPGGTGTLDEITEIMTKVALKQINAPCIVYNLNGYYDSLKVLLDHMIEMGLSTSDKQE
KIYFANNLLEIDGILTDANE

Sequences:

>Translated_180_residues
MKITVYLGSHEGSDPFLKEAVRELGVWIAENNHILVYGGSKIGLMGELADSVLNAEGMAIGVEPEFFIDDNLHHENLSEL
IITSDLQDRKRKMIELGDAFIAFPGGTGTLDEITEIMTKVALKQINAPCIVYNLNGYYDSLKVLLDHMIEMGLSTSDKQE
KIYFANNLLEIDGILTDANE
>Mature_180_residues
MKITVYLGSHEGSDPFLKEAVRELGVWIAENNHILVYGGSKIGLMGELADSVLNAEGMAIGVEPEFFIDDNLHHENLSEL
IITSDLQDRKRKMIELGDAFIAFPGGTGTLDEITEIMTKVALKQINAPCIVYNLNGYYDSLKVLLDHMIEMGLSTSDKQE
KIYFANNLLEIDGILTDANE

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322406, Length=195, Percent_Identity=31.2820512820513, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005269 [H]

Pfam domain/function: PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 19949; Mature: 19949

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITVYLGSHEGSDPFLKEAVRELGVWIAENNHILVYGGSKIGLMGELADSVLNAEGMAI
CEEEEEECCCCCCCHHHHHHHHHHCEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCEE
GVEPEFFIDDNLHHENLSELIITSDLQDRKRKMIELGDAFIAFPGGTGTLDEITEIMTKV
ECCCCEEECCCCCCCCHHHHEEECCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHH
ALKQINAPCIVYNLNGYYDSLKVLLDHMIEMGLSTSDKQEKIYFANNLLEIDGILTDANE
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEECEEEECCCC
>Mature Secondary Structure
MKITVYLGSHEGSDPFLKEAVRELGVWIAENNHILVYGGSKIGLMGELADSVLNAEGMAI
CEEEEEECCCCCCCHHHHHHHHHHCEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCEE
GVEPEFFIDDNLHHENLSELIITSDLQDRKRKMIELGDAFIAFPGGTGTLDEITEIMTKV
ECCCCEEECCCCCCCCHHHHEEECCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHH
ALKQINAPCIVYNLNGYYDSLKVLLDHMIEMGLSTSDKQEKIYFANNLLEIDGILTDANE
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEECEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]