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The map label for this gene is radA [H]

Identifier: 148381450

GI number: 148381450

Start: 3736783

End: 3738141

Strand: Reverse

Name: radA [H]

Synonym: CBO3508

Alternate gene names: 148381450

Gene position: 3738141-3736783 (Counterclockwise)

Preceding gene: 148381451

Following gene: 148381449

Centisome position: 96.17

GC content: 30.61

Gene sequence:

>1359_bases
ATGGCTAAAAATAAAATTGTTTATATATGTCAACAATGTGGATATGAATCGATAAAATGGTTAGGAAAATGTCCAGGATG
CAATTCATGGAATAGTATGGTAGAGGAAGAAAAACAATCAACTAATAAGACTATAAAAAATATAAATATTAAATCAGAGC
CTAAAATAATATCTACAATAAAATCAAGTGAATATGAGAGATTAGATACTGGAATAAATGAACTGAATAGAGTCTTAGGC
GGTGGTATAGTTAAGGGCTCTTTAACTCTTATATCTGGGTCTCCTGGCATAGGAAAGTCTACAATACTTTTACAAGCTGC
TAATAATATTGCTACTAAGTATGGTAAGATTTTATATGTGTCTGGAGAAGAATCAGAAGAGCAGATAAAAATGAGAGCAG
ATAGGCTTAAGGTGATATCAAAAGATATATACATACTTTCAGAGACAAATGTGGATATAATAAAAGAGCATATTACTACA
ATTAATCCTAAATTTGTTATAATAGATTCTATACAGACCCTTTTTAAAAGTGAACTATCTTCAGCTCCAGGTACTGTGTC
TCAAGTTAGGCAATGTTCTAACGATATTATGCTTATAAGTAAAAGTAATAACATACCTTTTTTTATAGTAGCGCATGTTA
CAAAACAAGGAGAATTAGCAGGACCTAGAGTTTTAGAACATATGGTAGATACGGTTTTATCTTTTGAAGGAGAAAGAACC
CAGGAATTTAGGATTTTAAGAACAGTAAAAAATCGTTTTGGAACTACAAGTGAAATTGGAGTTTTTGAAATGGCAGGAGA
AGGGTTATTAGAAATAAGCAATCCCTCTGCTGTATTTTTAGAAGAAACTGAATTTCAAAGGGAAGGTTCTGTAATAATAG
GTATAATGGAAGGGACTAGACCAATACTTATAGAAATACAAGCATTAGTAAGTGAAACGAAAGCTTATATGCCAAGAAGG
ACGGCAGTGGGAGTAGACACAGCTAGATTGAATCTAATATTAGCTGTGTTAGAAAAAAAATTAAATATACCTTTCTATAA
TTGTGATGTATATGTTAATGTAGTAGGAGGATTAGATTTAACAGGAACTTTTGCTGATTTGGGATTAGCATTAGCTTTAT
TATCTAGTGCTAAATCAAAAGATATAAAGTTACCTAAAGTTTTAGTGGTTGGAGAAATAGGACTTACAGGAGAGGTTCGC
CCCGTAAGTTTTTGTGATAGAATAGTAAATGAAGGTATAAAAATGGGATTTACCAATATAATTATACCTGATAGAAATAA
AGACAAAATTTCTGTTAAAAATAATGTTAACCTAATTGGTATATCTTCTTTAAGAGAAGGTATTAATAAAGTATTTTAA

Upstream 100 bases:

>100_bases
GCCAATAATTAAATTTATTTAATTATTGGTTTTTTAAAAATTATTTTACTAATTGATGTTATAATAATATTATTGTAATT
AAGGTTTTGGAGTTGATTAA

Downstream 100 bases:

>100_bases
TTGTGTAGGGTGAGAGAAGTGAGAATAGAAAAAGATAAAGAATTAATGAATATACTTAAAATAATGGCCCCAGGAACACC
CCTAAGAGAGGGGTTAGAGA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MAKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTIKSSEYERLDTGINELNRVLG
GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITT
INPKFVIIDSIQTLFKSELSSAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGTRPILIEIQALVSETKAYMPRR
TAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDLTGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVR
PVSFCDRIVNEGIKMGFTNIIIPDRNKDKISVKNNVNLIGISSLREGINKVF

Sequences:

>Translated_452_residues
MAKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTIKSSEYERLDTGINELNRVLG
GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITT
INPKFVIIDSIQTLFKSELSSAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGTRPILIEIQALVSETKAYMPRR
TAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDLTGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVR
PVSFCDRIVNEGIKMGFTNIIIPDRNKDKISVKNNVNLIGISSLREGINKVF
>Mature_451_residues
AKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTIKSSEYERLDTGINELNRVLGG
GIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITTI
NPKFVIIDSIQTLFKSELSSAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERTQ
EFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGTRPILIEIQALVSETKAYMPRRT
AVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDLTGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVRP
VSFCDRIVNEGIKMGFTNIIIPDRNKDKISVKNNVNLIGISSLREGINKVF

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=40.7407407407407, Blast_Score=353, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49750; Mature: 49619

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTI
CCCCCEEEEEHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
KSSEYERLDTGINELNRVLGGGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYV
HCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEHHHHHHCCCCEEEE
SGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLFKSELS
ECCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHC
SAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
CCCCHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCH
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGTR
HHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
PILIEIQALVSETKAYMPRRTAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDL
EEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECEEEEEEECCCCC
TGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVRPVSFCDRIVNEGIKMGFTNI
CCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHCCCEEE
IIPDRNKDKISVKNNVNLIGISSLREGINKVF
EECCCCCCEEEECCCCCEEEHHHHHHHHHHCC
>Mature Secondary Structure 
AKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTI
CCCCEEEEEHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
KSSEYERLDTGINELNRVLGGGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYV
HCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEHHHHHHCCCCEEEE
SGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLFKSELS
ECCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHC
SAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
CCCCHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCH
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGTR
HHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
PILIEIQALVSETKAYMPRRTAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDL
EEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECEEEEEEECCCCC
TGTFADLGLALALLSSAKSKDIKLPKVLVVGEIGLTGEVRPVSFCDRIVNEGIKMGFTNI
CCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHCCCEEE
IIPDRNKDKISVKNNVNLIGISSLREGINKVF
EECCCCCCEEEECCCCCEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]