Click here to switch to the map view.

The map label for this gene is sorC [H]

Identifier: 148381359

GI number: 148381359

Start: 3659112

End: 3660083

Strand: Reverse

Name: sorC [H]

Synonym: CBO3419

Alternate gene names: 148381359

Gene position: 3660083-3659112 (Counterclockwise)

Preceding gene: 148381360

Following gene: 148381358

Centisome position: 94.16

GC content: 30.35

Gene sequence:

>972_bases
ATGAAATATGATGATAGAATTTTATATAAAGTTGCACAAATGTACTATATTGATAATATGACACAATCTGAAATCGCAAA
ACGATTGGGCCAATATAGAACAACTATAAGCAGAATGTTGAAAAAGGCTAGAGAGGAAGGCATCGTTACCATAAATATAA
AAAATAACTTCGATGGTTGTTTCCAATTAGAGGATGCCCTAGAAAAAAACTTTAATCTAAAAGAAGCCATAGTTATACCA
ACAGATGAAGATGAAGTTGAGAGTATTAGACTTAAAAAATTAGGTCAAGCAGGAAGTGAATTTTTAAAAAGAATATTAAA
AGATGGTGATATATTAGGCTTTGCTTGGGGAAAATCTGTTGGAGAAGTAGCAAATACATTGAAAGATTGCAAAAATGTAT
CAGCTAACATAGTACCTTTAGTAGGAGGCCCACCTAGTGATATGGATAATAAATATCATGTTAATACAATAGTTTCTAGA
GTTAGTGATGAATTTAAAGCAAAAGGGCATTACTTTTATGCACCAGCAATAACAGCAGAGAAGTCTACAAAAGAAGCAAT
TATGAATGATAGCAATTTTAAAGGAATACTTGAATTATGGGATAAAGTTAATAAGGCTATTGTAGGAATTGGAGCACCAC
TTAAAGGTAATAACTTAATTTGGAGTGGATACTTTGGAGACGAAGACATACAGCTGTTAAAAGATGTTGATGCAGTAGGA
GATATATGTTCAAGATTTTTCGATATAAATGGCAACATAGTTGATGAGAAGGTAAAAGATAGAATAATAAGTGTAGAATT
AGAAAAATTAAAAAAAATGAAATATTCTATAGCTGTAGCAGAATCTTCAGAAAAAGCTTGGTCTATTTTAGGAGCTTTAA
ATGGCGGCTTTGTAAATGTTTTAATAACTAATAATGAAACAGCAGAAACGGTACTAAACTTACATGAGCAATTTACTAAA
AATAAAAAATAA

Upstream 100 bases:

>100_bases
TTTCATCAGTTGCACAAATGTGCAAAATTTGTAGATAAAATAACAAGGGGAATTTGATTAATAGTCTTCAAATAAAATTG
AGAAAGGTTGAAAATGCCTC

Downstream 100 bases:

>100_bases
ATATAATTTAAAACTTTGAAGGGAGTCTTATAAAATGGAAGGAAAAATGAAAGCAGTAGCTTTACATGCAATTAAGGATT
TGAGATATGAGGAAGTAGAT

Product: putative glucitol operon regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKYDDRILYKVAQMYYIDNMTQSEIAKRLGQYRTTISRMLKKAREEGIVTINIKNNFDGCFQLEDALEKNFNLKEAIVIP
TDEDEVESIRLKKLGQAGSEFLKRILKDGDILGFAWGKSVGEVANTLKDCKNVSANIVPLVGGPPSDMDNKYHVNTIVSR
VSDEFKAKGHYFYAPAITAEKSTKEAIMNDSNFKGILELWDKVNKAIVGIGAPLKGNNLIWSGYFGDEDIQLLKDVDAVG
DICSRFFDINGNIVDEKVKDRIISVELEKLKKMKYSIAVAESSEKAWSILGALNGGFVNVLITNNETAETVLNLHEQFTK
NKK

Sequences:

>Translated_323_residues
MKYDDRILYKVAQMYYIDNMTQSEIAKRLGQYRTTISRMLKKAREEGIVTINIKNNFDGCFQLEDALEKNFNLKEAIVIP
TDEDEVESIRLKKLGQAGSEFLKRILKDGDILGFAWGKSVGEVANTLKDCKNVSANIVPLVGGPPSDMDNKYHVNTIVSR
VSDEFKAKGHYFYAPAITAEKSTKEAIMNDSNFKGILELWDKVNKAIVGIGAPLKGNNLIWSGYFGDEDIQLLKDVDAVG
DICSRFFDINGNIVDEKVKDRIISVELEKLKKMKYSIAVAESSEKAWSILGALNGGFVNVLITNNETAETVLNLHEQFTK
NKK
>Mature_323_residues
MKYDDRILYKVAQMYYIDNMTQSEIAKRLGQYRTTISRMLKKAREEGIVTINIKNNFDGCFQLEDALEKNFNLKEAIVIP
TDEDEVESIRLKKLGQAGSEFLKRILKDGDILGFAWGKSVGEVANTLKDCKNVSANIVPLVGGPPSDMDNKYHVNTIVSR
VSDEFKAKGHYFYAPAITAEKSTKEAIMNDSNFKGILELWDKVNKAIVGIGAPLKGNNLIWSGYFGDEDIQLLKDVDAVG
DICSRFFDINGNIVDEKVKDRIISVELEKLKKMKYSIAVAESSEKAWSILGALNGGFVNVLITNNETAETVLNLHEQFTK
NKK

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=319, Percent_Identity=29.7805642633229, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1787791, Length=310, Percent_Identity=30.3225806451613, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36221; Mature: 36221

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYDDRILYKVAQMYYIDNMTQSEIAKRLGQYRTTISRMLKKAREEGIVTINIKNNFDGC
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
FQLEDALEKNFNLKEAIVIPTDEDEVESIRLKKLGQAGSEFLKRILKDGDILGFAWGKSV
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCHH
GEVANTLKDCKNVSANIVPLVGGPPSDMDNKYHVNTIVSRVSDEFKAKGHYFYAPAITAE
HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEECC
KSTKEAIMNDSNFKGILELWDKVNKAIVGIGAPLKGNNLIWSGYFGDEDIQLLKDVDAVG
CHHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
DICSRFFDINGNIVDEKVKDRIISVELEKLKKMKYSIAVAESSEKAWSILGALNGGFVNV
HHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCCCEEEE
LITNNETAETVLNLHEQFTKNKK
EEECCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYDDRILYKVAQMYYIDNMTQSEIAKRLGQYRTTISRMLKKAREEGIVTINIKNNFDGC
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
FQLEDALEKNFNLKEAIVIPTDEDEVESIRLKKLGQAGSEFLKRILKDGDILGFAWGKSV
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCHH
GEVANTLKDCKNVSANIVPLVGGPPSDMDNKYHVNTIVSRVSDEFKAKGHYFYAPAITAE
HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEECC
KSTKEAIMNDSNFKGILELWDKVNKAIVGIGAPLKGNNLIWSGYFGDEDIQLLKDVDAVG
CHHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
DICSRFFDINGNIVDEKVKDRIISVELEKLKKMKYSIAVAESSEKAWSILGALNGGFVNV
HHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCCCEEEE
LITNNETAETVLNLHEQFTKNKK
EEECCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]