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The map label for this gene is helD [H]

Identifier: 148380859

GI number: 148380859

Start: 3093335

End: 3095626

Strand: Reverse

Name: helD [H]

Synonym: CBO2904

Alternate gene names: 148380859

Gene position: 3095626-3093335 (Counterclockwise)

Preceding gene: 148380860

Following gene: 148380858

Centisome position: 79.64

GC content: 24.3

Gene sequence:

>2292_bases
ATGTCTATTGAACAAGAGAGTTTTAACATTGAAGAAGAAAAATTAAATAAGACTATAGAGTGGATAAAGGAAAAAATAAT
ATCTTTAAAAGAAAGAGAAGAATATATATTTAATAAAATAAATGAAATAAATAAAGAAGTTAAAGGATCATATAATTATG
AAGTAGAGGCACTTCAAGATTCTTTACAAATAAATAGAAAGAATTTAAATTCTTATAAATCATCAATTTCTGTACCCTAT
TTTGCTAGAATTGATTTTAAGGAAAAATTAAAGGATAATGAGAGTTTTTATATAGGAAAAGTAGGTCTATTAGATGAAGA
AGATAAGGAGGAGATGGTTGTAGATTGGCGATCTCCTATAGCAGATCTTTACTATAGTGGCGTACAAGGTAAAGCTTCCT
ATGAAGCTCCTATTGGAAATATAGAAGGGGAACTTTTACTTAAAAGAAAGTTTATTATAAAAAATAAAAAGCTAATAGAT
GCCTTTGATGAAGGAATAAATGAAATTATATTAAATTTTAATGAGGAAGATGAACAAAATGGAGAAAAGGCTTTAATAGA
TGATTTTTTAAAAATTAACTTAGAAGAAAATAGGGGAAACAAATTAAAAGATATAGTTTCAACTATACAAAAAGAACAGA
ATGATATTATAAGAGCAGATATGTATAAGCCGCTTATAATACAAGGTTCTGCAGGTTCAGGGAAAACTACCATAGCTCTT
CATAGAATAGCATATTTATTATATAAATATAAAAATAAAATTACGGGAGAGGATATAATAATACTAGCTCCAAATAAATT
GTTTTTAGATTACATATCTGAAGTTCTTCCTAATTTAGGAGTTGATAAAGTAAAACAAAGCACTTTTAATAAACTTTCTA
AAGAAATATTGAATTTTAATTATGAAATAATAGATAAGGATAAAAAATTATCTAAAATTATAGAAAATAAAAATAGCAAG
GAAAATAAATTTATAACTAATAGTAATAAATTAAAAGGATCTTTAGTTTATAAAAAAATGCTAGATAGATATATAAAATA
TTTGGAATTAAATGATATGTTCATAGATGATATAAAAATAGAGGGGTATGTAATATTTACTTCTAGAGAAATAATAAGAC
TTTATAAAAATGATTTAAAGCATCTTCCGCTAAATAAAAGAAAAATTGAAATAGGAAGATATTTAAAGAACAAAATAGAG
ACAAAAATTCAAAATGTATGGAATGATATAGATAAAGATTATATCTTAAAAATAAGAGAAGTAAGAGCAAAATACGAAGG
TGAAGAAGAAAGAACTAATATTATAAAATTATATGAAGAAAGAGACAATAAGAAGGAAAAAATAAAATTAGAAGCAGAAG
AAGTATTAAATAAAACTATTAGAGAATGGCTTATTGATGATGTAGTAGATGTATATAGAGATATGTATATTGATGAAGAA
AACTTAAATTATGCTACATCAGGCATAATACCAGAAGTTTTAGTTAATTATATAAAAAATAAAATAGAAAAAGAAATAGA
GAATGAAAAAATAGATGAAGAAGATCTAGCAGCACTTTTATATTTAAAAATAAAGATAGATGGAGTAGATAATTATAAAT
TTGCCCATATGGTTATAGATGAGGCTCAAGATTATAGTCCCTTAGAATTATATGTATTAAAATTGCTTTCAAAAGCTAGA
GGATATACTATAGTTGGTGATTTAGGTCAAAGTATATATTATTATAAAGGCATAGAAAACTGGGAAAAATTAATTAAAGA
AGTATATGAAGAAGGAGAATATATTCCACTAAAGCAAAGTTATCGTTCTACAGTGGAAATAGTAGATTTTGCAAATAAAG
TACTAAGAAAACAAAAAAATAATTTAGAACCAGCTAAAGCAGTGTTAAGGCATGGAAAACATCCAAAAAAGATTCAGTAT
AAGGACGAAAAAGATTTCTATGAAAAATTAAATAGTGCTATTGAAACCATAGAAGAAAAGAAAGATAAAACTATAGCAAT
AATCTGCAAAGATTATGAGCAGTGTGAGAGTTTAAAAGAGTCTTTACATTTAAAAGAAGAAAAACAATGGGAAATAGTAA
CTAAAGATACTGAAATGTTACCTAAGAGAATAATTATACCATCATACATAACAAAAGGTTTAGAATTTGATTGTTCTATA
ATTTATGATTGTAGTGATGAAAATTATAGAGAAACTGAATTAGACAAAAAGATTTTATATGTAGTTCTAACAAGAGCATT
GCATGAAGAGTATATTTTTTATAAAGATAATATAACTAAGTTATTAATATAA

Upstream 100 bases:

>100_bases
CCCTTAAAATATCGTAAAATAATAAAGTTAAATAAAGTAAAAAAATAGTGGTAAATATGTTAAAATATTAAGGTCGTGTT
TGTATTTAAGGAGGTATATT

Downstream 100 bases:

>100_bases
GAGGAAATAAAATGAATTGTAAAATTATTATATTTAAGAAAATGATGACAATAATTTAACAATATTTTGTATATTTCTAA
GCTTTTAAAAGTTAAAAATT

Product: putative helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 763; Mature: 762

Protein sequence:

>763_residues
MSIEQESFNIEEEKLNKTIEWIKEKIISLKEREEYIFNKINEINKEVKGSYNYEVEALQDSLQINRKNLNSYKSSISVPY
FARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPIADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLID
AFDEGINEIILNFNEEDEQNGEKALIDDFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIAL
HRIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFNYEIIDKDKKLSKIIENKNSK
ENKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKIEGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIE
TKIQNVWNDIDKDYILKIREVRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIREWLIDDVVDVYRDMYIDEE
NLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVIDEAQDYSPLELYVLKLLSKAR
GYTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQY
KDEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSI
IYDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI

Sequences:

>Translated_763_residues
MSIEQESFNIEEEKLNKTIEWIKEKIISLKEREEYIFNKINEINKEVKGSYNYEVEALQDSLQINRKNLNSYKSSISVPY
FARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPIADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLID
AFDEGINEIILNFNEEDEQNGEKALIDDFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIAL
HRIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFNYEIIDKDKKLSKIIENKNSK
ENKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKIEGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIE
TKIQNVWNDIDKDYILKIREVRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIREWLIDDVVDVYRDMYIDEE
NLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVIDEAQDYSPLELYVLKLLSKAR
GYTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQY
KDEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSI
IYDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI
>Mature_762_residues
SIEQESFNIEEEKLNKTIEWIKEKIISLKEREEYIFNKINEINKEVKGSYNYEVEALQDSLQINRKNLNSYKSSISVPYF
ARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPIADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLIDA
FDEGINEIILNFNEEDEQNGEKALIDDFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALH
RIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFNYEIIDKDKKLSKIIENKNSKE
NKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKIEGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIET
KIQNVWNDIDKDYILKIREVRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIREWLIDDVVDVYRDMYIDEEN
LNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVIDEAQDYSPLELYVLKLLSKARG
YTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQYK
DEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSII
YDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI

Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]

COG id: COG3973

COG function: function code R; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 90118; Mature: 89986

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEQESFNIEEEKLNKTIEWIKEKIISLKEREEYIFNKINEINKEVKGSYNYEVEALQD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SLQINRKNLNSYKSSISVPYFARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPI
HHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
ADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLIDAFDEGINEIILNFNEEDEQN
HHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCHHHHHHHHCHHHHEECCCCCCCCC
GEKALIDDFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIAL
CCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCHHHHH
HRIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFN
HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
YEIIDKDKKLSKIIENKNSKENKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKI
CEEECCHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEE
EGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIETKIQNVWNDIDKDYILKIRE
EEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIREWLIDDVVDVYRDMYIDEE
HHHHHCCCHHHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVID
CCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEEEEECCCCCCEEHHHHHH
EAQDYSPLELYVLKLLSKARGYTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIPLKQS
CCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCEECCHHH
YRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQYKDEKDFYEKLNSAIETIEEK
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSI
CCCEEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCHHHHHCCCCCCEEE
IYDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCC
>Mature Secondary Structure 
SIEQESFNIEEEKLNKTIEWIKEKIISLKEREEYIFNKINEINKEVKGSYNYEVEALQD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SLQINRKNLNSYKSSISVPYFARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPI
HHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
ADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLIDAFDEGINEIILNFNEEDEQN
HHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCHHHHHHHHCHHHHEECCCCCCCCC
GEKALIDDFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIAL
CCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCHHHHH
HRIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFN
HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
YEIIDKDKKLSKIIENKNSKENKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKI
CEEECCHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEE
EGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIETKIQNVWNDIDKDYILKIRE
EEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIREWLIDDVVDVYRDMYIDEE
HHHHHCCCHHHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVID
CCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEEEEECCCCCCEEHHHHHH
EAQDYSPLELYVLKLLSKARGYTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIPLKQS
CCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCEECCHHH
YRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQYKDEKDFYEKLNSAIETIEEK
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSI
CCCEEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCHHHHHCCCCCCEEE
IYDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]