Click here to switch to the map view.

The map label for this gene is prdD [H]

Identifier: 148380432

GI number: 148380432

Start: 2612276

End: 2613052

Strand: Reverse

Name: prdD [H]

Synonym: CBO2476

Alternate gene names: 148380432

Gene position: 2613052-2612276 (Counterclockwise)

Preceding gene: 148380434

Following gene: 148380431

Centisome position: 67.23

GC content: 31.15

Gene sequence:

>777_bases
GTGGAACAAGAAATCATATTAAGAAGATTAGTTATAAAGGCCTTTCATATTACTAAAGTAGAGTTTTCAGATAGTACTTA
TATAGAGGATAAGGTTTTATATATAAGAAAAGATATATTAGATGGAATATTACAACATGAAGATATGGAAGGACAAGAAT
TAATAGAAAAAATTGATTTGAATATTATAAATCCAAAGGAAAGACATAAATTTGTGAATTCTATAATGGATTTTTCTCCA
GTAGCTACTAAAGTTTTGGGAGCTTTAGGAGAGGGCATAACACATGTGTTAACAGGGGTACAAGTAATGTTAACAGGAGC
AGAAGAATGTGGTATTCAGGTAGCTGAATTTGGTTCTTCAGAAGGAATTTTAGATGAACAGGTTGTTTTTGGAAGAAGAG
GAACTCCAGCAGAGGATGATATAATTGTTCATATAAATGTTATATTAAAAAATGGACAAGCTGCAAATAGGCCAGGACCA
ATGGCAGCTCATAGAGTTTGCGATATAATAATACAAGAAATTAGAAACTACCTTAAAAAAATTAATGGTAGATATTGTGA
TGAAAAGCATGAATATTTTGATAAAATAAGACCAGGCAAAAAGAAGGTTGTAATTGTTAAACAAGTTGCAGGTCAAGGTT
GTATGTATGATACAGGATTATTTGCTAAAGAACCTGGTGGACATATTGGATGTAAATCTATAATAGATATGGGAAATATG
CCAGTGGTTGTAAGTCCAAATGAATATAGAGATGGCATATTAAGAGCCATGAATTAA

Upstream 100 bases:

>100_bases
TTACATAATTATCAATATATAAGTTTTTGGATATAAATGTTAAACCTGTATCAATCTAATGGTTATGAAGTTATTAAAAT
GGAAAAAGGTGGTGATGCTG

Downstream 100 bases:

>100_bases
GGGGTGATATTTTATGGGTATAGGACCATCTACAAAAGAAACAACATTACATCATTTTAGAGACCCTTTAGTAGAAATAG
TTTCTAATGACGGAGATATA

Product: PrdD protein

Products: NA

Alternate protein names: D-proline reductase 45 kDa subunit; D-proline reductase 23 kDa subunit [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MEQEIILRRLVIKAFHITKVEFSDSTYIEDKVLYIRKDILDGILQHEDMEGQELIEKIDLNIINPKERHKFVNSIMDFSP
VATKVLGALGEGITHVLTGVQVMLTGAEECGIQVAEFGSSEGILDEQVVFGRRGTPAEDDIIVHINVILKNGQAANRPGP
MAAHRVCDIIIQEIRNYLKKINGRYCDEKHEYFDKIRPGKKKVVIVKQVAGQGCMYDTGLFAKEPGGHIGCKSIIDMGNM
PVVVSPNEYRDGILRAMN

Sequences:

>Translated_258_residues
MEQEIILRRLVIKAFHITKVEFSDSTYIEDKVLYIRKDILDGILQHEDMEGQELIEKIDLNIINPKERHKFVNSIMDFSP
VATKVLGALGEGITHVLTGVQVMLTGAEECGIQVAEFGSSEGILDEQVVFGRRGTPAEDDIIVHINVILKNGQAANRPGP
MAAHRVCDIIIQEIRNYLKKINGRYCDEKHEYFDKIRPGKKKVVIVKQVAGQGCMYDTGLFAKEPGGHIGCKSIIDMGNM
PVVVSPNEYRDGILRAMN
>Mature_258_residues
MEQEIILRRLVIKAFHITKVEFSDSTYIEDKVLYIRKDILDGILQHEDMEGQELIEKIDLNIINPKERHKFVNSIMDFSP
VATKVLGALGEGITHVLTGVQVMLTGAEECGIQVAEFGSSEGILDEQVVFGRRGTPAEDDIIVHINVILKNGQAANRPGP
MAAHRVCDIIIQEIRNYLKKINGRYCDEKHEYFDKIRPGKKKVVIVKQVAGQGCMYDTGLFAKEPGGHIGCKSIIDMGNM
PVVVSPNEYRDGILRAMN

Specific function: D-proline reductase catalyzes the reductive cleavage of a C-N bond in D-proline resulting in the formation of 5- aminovalerate. The alpha subunit has been shown to bind D-proline, presumably via the pyruvoyl group [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015417 [H]

Pfam domain/function: PF09338 Gly_reductase [H]

EC number: =1.21.4.1 [H]

Molecular weight: Translated: 28859; Mature: 28859

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQEIILRRLVIKAFHITKVEFSDSTYIEDKVLYIRKDILDGILQHEDMEGQELIEKIDL
CCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
NIINPKERHKFVNSIMDFSPVATKVLGALGEGITHVLTGVQVMLTGAEECGIQVAEFGSS
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHCEEHHHCCCC
EGILDEQVVFGRRGTPAEDDIIVHINVILKNGQAANRPGPMAAHRVCDIIIQEIRNYLKK
CCCCCHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
INGRYCDEKHEYFDKIRPGKKKVVIVKQVAGQGCMYDTGLFAKEPGGHIGCKSIIDMGNM
HCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCHHHHHCCCCC
PVVVSPNEYRDGILRAMN
CEEECCCHHHHHHHHCCC
>Mature Secondary Structure
MEQEIILRRLVIKAFHITKVEFSDSTYIEDKVLYIRKDILDGILQHEDMEGQELIEKIDL
CCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
NIINPKERHKFVNSIMDFSPVATKVLGALGEGITHVLTGVQVMLTGAEECGIQVAEFGSS
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHCEEHHHCCCC
EGILDEQVVFGRRGTPAEDDIIVHINVILKNGQAANRPGPMAAHRVCDIIIQEIRNYLKK
CCCCCHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
INGRYCDEKHEYFDKIRPGKKKVVIVKQVAGQGCMYDTGLFAKEPGGHIGCKSIIDMGNM
HCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCHHHHHCCCCC
PVVVSPNEYRDGILRAMN
CEEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]