Click here to switch to the map view.

The map label for this gene is yfeT [C]

Identifier: 148379956

GI number: 148379956

Start: 2132010

End: 2132747

Strand: Reverse

Name: yfeT [C]

Synonym: CBO1994

Alternate gene names: 148379956

Gene position: 2132747-2132010 (Counterclockwise)

Preceding gene: 148379957

Following gene: 148379955

Centisome position: 54.87

GC content: 26.83

Gene sequence:

>738_bases
ATGGTTATAGAAGTTAATAAAAGTATTTTTGATAGTCTTACTGAAACAGAGAAAACAGTAGTTAAATATATTAATTCAAA
TGAAAGTAACATACCTAATATGTCTATAGTAGATGTAGCAGAAAAATCTTTTACTTCTCCAGCAACGGTTTCTAGAACTA
TTAAAAAATGCGGATTAGAAGGTTTTTCGGAATTAAGATACAAAATTTCAGCTAAAAATGACTATAATCATGATTCTAAA
AAAGTAAATGAAATACTGGGGAAATCTTTAATAGAAGTAACAAAAACTATAGAAAATATTTCTGTAGAAAATTTATTGAA
AACTGTTAGGCTAATAAAAGAGGCAAAACGTATATATATCTTAGCTAGAGGGCTTACAGAACTTGTAGCTCAAGAGTTTA
ATTTAAAATTAGAGTTGTTAGGATATAATACATTTTTGATAGTAGATCCTAATATTATGAGAAAAATATGCAAAACTTTA
GATAAAGAGGAACTTGTAATAGTTTTTTCACTGAAAATTGGCTCTCCTGAAATAGTAGAGTCAGCAGAAAGTGCAGTTAA
AACTGGGGCAAAATTAATTACTTGTTGTTGTGTTAAAAATAGTAAATTGGAAAACCTATCAGATATTACATTAATAGGCT
ACAAGCAGTCTAGAACCGCTATTAAAGAATTTGAAGTTACTTCAAGATTACCCTTATTTATTATATCAAGAGCTATTATA
GATTATTTAATAATTTAA

Upstream 100 bases:

>100_bases
AGAAAAAGGGTCATTAATATATAAATACAAAGAAAATTTTAAATGAATTTCCCTATTGGGTAAAATAACATCTAGCAATT
ATATGAATGGGGATGAAAAA

Downstream 100 bases:

>100_bases
AGTCTATATGAAAAGAGATTTTCAATATTGAAAATCTCTTTTTTGTATTTTCAGAGTTATTTTACATGACTCTAATATAG
ATAAATACAGGATTTAATTG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPNMSIVDVAEKSFTSPATVSRTIKKCGLEGFSELRYKISAKNDYNHDSK
KVNEILGKSLIEVTKTIENISVENLLKTVRLIKEAKRIYILARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTL
DKEELVIVFSLKIGSPEIVESAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
DYLII

Sequences:

>Translated_245_residues
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPNMSIVDVAEKSFTSPATVSRTIKKCGLEGFSELRYKISAKNDYNHDSK
KVNEILGKSLIEVTKTIENISVENLLKTVRLIKEAKRIYILARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTL
DKEELVIVFSLKIGSPEIVESAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
DYLII
>Mature_245_residues
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPNMSIVDVAEKSFTSPATVSRTIKKCGLEGFSELRYKISAKNDYNHDSK
KVNEILGKSLIEVTKTIENISVENLLKTVRLIKEAKRIYILARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTL
DKEELVIVFSLKIGSPEIVESAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
DYLII

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=220, Percent_Identity=24.5454545454545, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 27560; Mature: 27560

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPNMSIVDVAEKSFTSPATVSRTIKKCGLE
CEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCC
GFSELRYKISAKNDYNHDSKKVNEILGKSLIEVTKTIENISVENLLKTVRLIKEAKRIYI
CHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTLDKEELVIVFSLKIGSPEIVE
HHHHHHHHHHHHHCCEEEEEECEEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCHHHHH
SAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
HHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHH
DYLII
HHHCC
>Mature Secondary Structure
MVIEVNKSIFDSLTETEKTVVKYINSNESNIPNMSIVDVAEKSFTSPATVSRTIKKCGLE
CEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCC
GFSELRYKISAKNDYNHDSKKVNEILGKSLIEVTKTIENISVENLLKTVRLIKEAKRIYI
CHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LARGLTELVAQEFNLKLELLGYNTFLIVDPNIMRKICKTLDKEELVIVFSLKIGSPEIVE
HHHHHHHHHHHHHCCEEEEEECEEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCHHHHH
SAESAVKTGAKLITCCCVKNSKLENLSDITLIGYKQSRTAIKEFEVTSRLPLFIISRAII
HHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHH
DYLII
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]