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The map label for this gene is radB [H]

Identifier: 148379838

GI number: 148379838

Start: 2004669

End: 2006372

Strand: Reverse

Name: radB [H]

Synonym: CBO1877

Alternate gene names: 148379838

Gene position: 2006372-2004669 (Counterclockwise)

Preceding gene: 148379839

Following gene: 148379837

Centisome position: 51.62

GC content: 27.29

Gene sequence:

>1704_bases
ATGCTCCTTCAACTTAATATAAAGAATTTTGCACTTATAGAAGAATTGTCTATATCCTTTGATAAAGGATTTAATGTACT
TACAGGTGAAACTGGAGCTGGTAAATCTATTCTTATAGATGCTATAAGTTATGTTCTAGGTGGTAAATTCAACAGAGATC
TTATAAGAACTGGAGAAAATAAAACCTATGTGGAAGCAATATTTTCCATTGAGAATGAAAGTACAGAGAGAATATTAAAA
GATCAAGGGATAGATTTTGAGGATATATTAATAATAGGAAGAGAAACCTTTCAATATGGTAAAAGTATAGCTAAAGTAAA
TGCAAAAAGTGTTTTATTAGCTAATTTAAAGGAAATAACAAGCACCTTATTAGATATTCACGGACAACATGAAAATCAAA
ATCTTTTAAGCTGTGAGAATCATATAAATTATTTAGATTATTTTAGTGAAAAAGAATTATATTCTATTATGGAAAAATAT
AAGAGTGAGTATTTAAATCTTTTAAATATAGAAAATAAAATAAAAGAGCTATCCGGTGGAGATGAAAGTGAAAGAGAAAA
GTTAATGGACTTTTTAAAATATCAAATTAAAGAAATAGGAGAGTCTAATTTAAAAGAGGGAGAAGAAGAAGAATTAGATA
ATAAATTTTTAGAACTTTCAAACGCTGAAAAAATTAGTAAAGTTTTAAATAATAGCTATGGAATATTATATGGGGGATTA
GAAGAGGAGTCCTCAGCCTTTGATAGTCTAGGATATGTTATAAGAGAGATGGAATCTATTAATAGCATAGATAAGATTAC
CTCCATATGTCAAAGCTTAAAGGATGCCTATTATATAATAGAGGAGTCCATAAGAAATATAGGAGATATAAAAGATAACA
TATATTATGATGAGAATGAATTAGATCGCATAAATAGTAGGCTTTTTCAAATATCTACTCTTAAAAAAAAGTATGGTACA
ACCATAAAAGAGATTATAGAATATAAAGATAAAATAGAAAAACAATATGAGGATATGATAAACTCAGAAGAAATAATAGA
AAAATTGAACAATGATAGGAAAAAAGTATTAAATAATTTAAAAGAAATAGCCATGCAAATGCATAATGTAAGAGTTAAGT
ACGCAGAAGAATTAGAAGTAAGGGTTAAAGAAGAATTAAGTTATGTAGGACTTTCTAAAACTAGATTTAAAATTAATGTA
GATCTAGTATCTAGTTTTTTTAAAAGCGGCTGTGATAAAGTAGAATTTTATGTATCTACCAATCCAGGAGAGCCTTTAAA
ACCTTTAGATAAAGTAGTGTCTGGAGGAGAGCTTTCACGAATAATGCTAGCTTTAAAAACTGTATTTGTAGATAAGGATA
AAATACCTTCAGTTATATTTGATGAAATAGATACAGGTATAAGTGGAGTAGTGGCACAAAGTGTAGGAGAGAAGATGTAC
TCTATATCTCATGGTCGTCAAGTATTTTGTATAACACATTTATCACAAATAGCTTGTATGTCTGATAATCACTATTATAT
ACATAAAGAAGTATTACAGGACAAAACCTATACAAAGGTTACAAAATTGAGTAAAGAAGATAAAGAAATAGAAATAGGAA
AAATGATAGGAGGATCAAATCTTACAGATATAACCCTTCAAAATGCAAAGGAAATAATAAAAATAGCGGACAATAAAAAA
GAAAAAATATTAAAAAATTCCTAA

Upstream 100 bases:

>100_bases
AGGAGATAATACTATATTTGTTATGGCAAGAACTAATGAGAAAGCTCAAGAGATAACTATGAAATTAAAAAAGATTATTA
CTGCATAAGGGGGATTTAAA

Downstream 100 bases:

>100_bases
AATGGTATTGACAAAATAATAGATAAGGTTATAATAAATTCTAAAGATGTTTAAAATTAAATAAAAAGCTCTTATCAAGA
GTGGTGGAGGGATCAGGCCC

Product: DNA repair protein recN

Products: NA

Alternate protein names: Recombination protein N [H]

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MLLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGKFNRDLIRTGENKTYVEAIFSIENESTERILK
DQGIDFEDILIIGRETFQYGKSIAKVNAKSVLLANLKEITSTLLDIHGQHENQNLLSCENHINYLDYFSEKELYSIMEKY
KSEYLNLLNIENKIKELSGGDESEREKLMDFLKYQIKEIGESNLKEGEEEELDNKFLELSNAEKISKVLNNSYGILYGGL
EEESSAFDSLGYVIREMESINSIDKITSICQSLKDAYYIIEESIRNIGDIKDNIYYDENELDRINSRLFQISTLKKKYGT
TIKEIIEYKDKIEKQYEDMINSEEIIEKLNNDRKKVLNNLKEIAMQMHNVRVKYAEELEVRVKEELSYVGLSKTRFKINV
DLVSSFFKSGCDKVEFYVSTNPGEPLKPLDKVVSGGELSRIMLALKTVFVDKDKIPSVIFDEIDTGISGVVAQSVGEKMY
SISHGRQVFCITHLSQIACMSDNHYYIHKEVLQDKTYTKVTKLSKEDKEIEIGKMIGGSNLTDITLQNAKEIIKIADNKK
EKILKNS

Sequences:

>Translated_567_residues
MLLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGKFNRDLIRTGENKTYVEAIFSIENESTERILK
DQGIDFEDILIIGRETFQYGKSIAKVNAKSVLLANLKEITSTLLDIHGQHENQNLLSCENHINYLDYFSEKELYSIMEKY
KSEYLNLLNIENKIKELSGGDESEREKLMDFLKYQIKEIGESNLKEGEEEELDNKFLELSNAEKISKVLNNSYGILYGGL
EEESSAFDSLGYVIREMESINSIDKITSICQSLKDAYYIIEESIRNIGDIKDNIYYDENELDRINSRLFQISTLKKKYGT
TIKEIIEYKDKIEKQYEDMINSEEIIEKLNNDRKKVLNNLKEIAMQMHNVRVKYAEELEVRVKEELSYVGLSKTRFKINV
DLVSSFFKSGCDKVEFYVSTNPGEPLKPLDKVVSGGELSRIMLALKTVFVDKDKIPSVIFDEIDTGISGVVAQSVGEKMY
SISHGRQVFCITHLSQIACMSDNHYYIHKEVLQDKTYTKVTKLSKEDKEIEIGKMIGGSNLTDITLQNAKEIIKIADNKK
EKILKNS
>Mature_567_residues
MLLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGKFNRDLIRTGENKTYVEAIFSIENESTERILK
DQGIDFEDILIIGRETFQYGKSIAKVNAKSVLLANLKEITSTLLDIHGQHENQNLLSCENHINYLDYFSEKELYSIMEKY
KSEYLNLLNIENKIKELSGGDESEREKLMDFLKYQIKEIGESNLKEGEEEELDNKFLELSNAEKISKVLNNSYGILYGGL
EEESSAFDSLGYVIREMESINSIDKITSICQSLKDAYYIIEESIRNIGDIKDNIYYDENELDRINSRLFQISTLKKKYGT
TIKEIIEYKDKIEKQYEDMINSEEIIEKLNNDRKKVLNNLKEIAMQMHNVRVKYAEELEVRVKEELSYVGLSKTRFKINV
DLVSSFFKSGCDKVEFYVSTNPGEPLKPLDKVVSGGELSRIMLALKTVFVDKDKIPSVIFDEIDTGISGVVAQSVGEKMY
SISHGRQVFCITHLSQIACMSDNHYYIHKEVLQDKTYTKVTKLSKEDKEIEIGKMIGGSNLTDITLQNAKEIIKIADNKK
EKILKNS

Specific function: May be involved in recombinational repair of damaged DNA [H]

COG id: COG0497

COG function: function code L; ATPase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recN family [H]

Homologues:

Organism=Escherichia coli, GI48994901, Length=563, Percent_Identity=32.3268206039076, Blast_Score=300, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004604
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 64833; Mature: 64833

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGKFNRDLIRTGEN
CEEEEECCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
KTYVEAIFSIENESTERILKDQGIDFEDILIIGRETFQYGKSIAKVNAKSVLLANLKEIT
HHHHHHHHHHCCHHHHHHHHHCCCCHHHEEEECHHHHHHHHHHHHHCHHHHHHHHHHHHH
STLLDIHGQHENQNLLSCENHINYLDYFSEKELYSIMEKYKSEYLNLLNIENKIKELSGG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DESEREKLMDFLKYQIKEIGESNLKEGEEEELDNKFLELSNAEKISKVLNNSYGILYGGL
CHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCC
EEESSAFDSLGYVIREMESINSIDKITSICQSLKDAYYIIEESIRNIGDIKDNIYYDENE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCEECCHH
LDRINSRLFQISTLKKKYGTTIKEIIEYKDKIEKQYEDMINSEEIIEKLNNDRKKVLNNL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
KEIAMQMHNVRVKYAEELEVRVKEELSYVGLSKTRFKINVDLVSSFFKSGCDKVEFYVST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCEEEEEEEC
NPGEPLKPLDKVVSGGELSRIMLALKTVFVDKDKIPSVIFDEIDTGISGVVAQSVGEKMY
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
SISHGRQVFCITHLSQIACMSDNHYYIHKEVLQDKTYTKVTKLSKEDKEIEIGKMIGGSN
HHCCCCEEEEEHHHHHHHHCCCCCEEEEHHHHCCCHHHHHHHHCCCCCCEEHHHEECCCC
LTDITLQNAKEIIKIADNKKEKILKNS
CCHHHHHHHHHHHHHHCCCHHHHCCCC
>Mature Secondary Structure
MLLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGKFNRDLIRTGEN
CEEEEECCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
KTYVEAIFSIENESTERILKDQGIDFEDILIIGRETFQYGKSIAKVNAKSVLLANLKEIT
HHHHHHHHHHCCHHHHHHHHHCCCCHHHEEEECHHHHHHHHHHHHHCHHHHHHHHHHHHH
STLLDIHGQHENQNLLSCENHINYLDYFSEKELYSIMEKYKSEYLNLLNIENKIKELSGG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DESEREKLMDFLKYQIKEIGESNLKEGEEEELDNKFLELSNAEKISKVLNNSYGILYGGL
CHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCC
EEESSAFDSLGYVIREMESINSIDKITSICQSLKDAYYIIEESIRNIGDIKDNIYYDENE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCEECCHH
LDRINSRLFQISTLKKKYGTTIKEIIEYKDKIEKQYEDMINSEEIIEKLNNDRKKVLNNL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
KEIAMQMHNVRVKYAEELEVRVKEELSYVGLSKTRFKINVDLVSSFFKSGCDKVEFYVST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCEEEEEEEC
NPGEPLKPLDKVVSGGELSRIMLALKTVFVDKDKIPSVIFDEIDTGISGVVAQSVGEKMY
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
SISHGRQVFCITHLSQIACMSDNHYYIHKEVLQDKTYTKVTKLSKEDKEIEIGKMIGGSN
HHCCCCEEEEEHHHHHHHHCCCCCEEEEHHHHCCCHHHHHHHHCCCCCCEEHHHEECCCC
LTDITLQNAKEIIKIADNKKEKILKNS
CCHHHHHHHHHHHHHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]