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The map label for this gene is yjcD [H]

Identifier: 148379390

GI number: 148379390

Start: 1541353

End: 1543365

Strand: Direct

Name: yjcD [H]

Synonym: CBO1414

Alternate gene names: 148379390

Gene position: 1541353-1543365 (Clockwise)

Preceding gene: 148379389

Following gene: 148379391

Centisome position: 39.65

GC content: 25.04

Gene sequence:

>2013_bases
ATGATAGATTATAGTTTCTTAGATCAGTATCAAAAGGAAGCGGTTAAATGTCATAAGAATAATACATTAGTGGTAGCTCC
ACCTGGTTCCGGTAAAACCACTGTTATTATAAATAGAGTTGTGCATTTAATAGAAGATTTAAAAATAAATCCTAATAATA
TATTAGTAATAACTTTTACTAGGGCTGCAGCTATGAATATGAAGGAAAGATATAAAAAAATAAGTGTCAGTAGGAAAATA
CCTTTTTTTGGAACATTTCATGGCCTTTTTTATAAAATATTGAACAGACACTTTAAAAATATAAATATAATAAGTAGCAA
GGAAGTCTATTCTCTAATAAATAATATACTTATATCTTATTTGGATTCTGTAAATGAGGATAAGGTAAGAGACGTTTTAA
ATGATATATCACTTTTTAAAACTAGTGGGTTAAATATGAAGGATTTTGTTCCTAAAATTGATAAAAGTATATTTGAACAC
TGTTTTAATAGCTATGAAGAGTATAAAGATAAAAAGGAACTTTTAGATTTTGATGATTTGCAAATTAATATATTTAAACT
TTTAAAGGAAGATGAAAGAATTCTTAAGGGTTATAATAAACTATTTAAATATATATTAGTAGATGAATTTCAAGATTGTG
ATACATTGCAAATAAATATTCTTCAAATGTTAAGTGAGGGAAATTCTCTATTCGCAGTAGGGGATGAGGATCAGTGTATA
TATTCCTTTAGAGGATCTAAGCCAGAGTGTATGGTAGATTTTAATCATTATTTTAAAAAAGGAGAAAAGATATATCTAAG
ATATAATTATAGAAGTCCTAAAAATATAGTAGGGATTTCTAAAAATCTTATTAAAAATAATAAATTAAGAAATAATAAGA
GAATAGAAGCTTATAATGATTATGATAAGAATATAGTGTTAAAATCCTTTCTGAATGAAAGGGAGCAAGCAGAGGAAATA
AGTAAAATAATTAATGATATTATAAAGAAGGGCTATGGATATAAAGATGTAGCCATACTTTATAGAACTAATATGGAAAG
TAGAAGTTTAACAGATTTGTTTTTTAAAAAAAGAATACCTTTTAGACTTTTAGATAAGGGTTATAATTTTTTTAATCATT
TTGTATGTAGGGATATACTAGCTTATATGCAAGTTTGTATAGATTCCTATGATAAGAAAAGTTTTTTAAAGATTATAAAT
AAACCCTTTAGGTATATAAGTAAATTAAATGTGGAAAGGGTAAGAAGATATAAATATGCTAAAAATAGCTTTGATATATT
AAAGGAACAAAAGGATATACAACCTTTTCAAATTAAGAATTTAGAAAATCTTGAAAAGGATATAAACAAAATGAATAAAA
TGAGTGCCCAAGATGCCATAGGTCACATAATCCATAATTTAGGCTATGAAGAGTATATTAAAGAATATAGTGAAAGAATA
AAAATAGATAAAGAAGAACTTTTACAAATAGTAGATGAATTAAAAGAAGCAGCTGAAGAATATACAAGTATTTTAAGCTT
TTTAGTTCATGTAGAGGAAGTAGAAAAAGAAATAAATAAAAAAGAAATAAATGAAGATAGTGTAATATTAAGTACAATAC
ATGGGGTTAAGGGCATGGAATTTAAAAATGTAGTTATTGTGAATTGTAATGAAGGTAATATTCCTTACAGTAAAGCAGAT
GAAGAAGTTAATATAGAGGAAGAGAGAAGACTTTTTTATGTAGGTATCACAAGGGCAAAAGAAAACTTATATTTAACTGT
ACCAAAGGTTATAAGAGGGAAAAATAAAGAAAACTCTAATTTTATAAAGGAATGCAAGTTAGATAAAGAATTATTAGAAA
ATGATTATTTTAAAGGAAAAGAAATAGTGATTCATAAGGTATTTGGTGAAGGAATTATTGAAAATCAAGGGGAAGATTAT
GTGGAAATAGGATTTTTAGATGGAACTAAAAGAAAATTTGATAGAAATGTTATAACTAAAAGTAATATTATTAAAAAGAA
AAGTGTATCATAA

Upstream 100 bases:

>100_bases
TTATAAATAATAGTAAATGTTGTTATTGTAAATTTGATATTTTCTTTAGCTTCTAGTAAAGTATACTTAATTAACATTAG
AAAGTTAAGGGAGTTTTTAT

Downstream 100 bases:

>100_bases
GGTTTTCCATACATGTAACAGCAAAAACATGCGTGGAGGTATGGAATAAAAATGGCTAAATTAAGGTTGAAAAACTGATA
AAAGATATATAAGTTTACAA

Product: ATP-dependent DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRKI
PFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINIFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILSFLVHVEEVEKEINKKEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGEDY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS

Sequences:

>Translated_670_residues
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRKI
PFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINIFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILSFLVHVEEVEKEINKKEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGEDY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS
>Mature_670_residues
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRKI
PFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINIFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILSFLVHVEEVEKEINKKEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGEDY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI48994965, Length=650, Percent_Identity=30.3076923076923, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI2367296, Length=682, Percent_Identity=28.7390029325513, Blast_Score=259, Evalue=4e-70,
Organism=Saccharomyces cerevisiae, GI6322369, Length=466, Percent_Identity=27.6824034334764, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6324477, Length=636, Percent_Identity=22.4842767295597, Blast_Score=102, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 78874; Mature: 78874

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCEECCCCEEEEEEC
RAAAMNMKERYKKISVSRKIPFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISY
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHH
LDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEHCFNSYEEYKDKKELLDFDDL
HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
QINIFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEE
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYND
EEECCCCCCEEEEHHHHHCCCCEEEEEEECCCCCCHHCCHHHHHHCCCCCCCCCEEEECC
YDKNIVLKSFLNEREQAEEISKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
FRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIINKPFRYISKLNVERVRRYKYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
KNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
CCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
KIDKEELLQIVDELKEAAEEYTSILSFLVHVEEVEKEINKKEINEDSVILSTIHGVKGME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
FKNVVIVNCNEGNIPYSKADEEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSN
CCCEEEEECCCCCCCCCCCCCCCCCHHHCEEEEEEEEECCCCEEEEECHHHCCCCCCCCH
FIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGEDYVEIGFLDGTKRKFDRNVITK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCHHHH
SNIIKKKSVS
HHHCCCCCCC
>Mature Secondary Structure
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCEECCCCEEEEEEC
RAAAMNMKERYKKISVSRKIPFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISY
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHH
LDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEHCFNSYEEYKDKKELLDFDDL
HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
QINIFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEE
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYND
EEECCCCCCEEEEHHHHHCCCCEEEEEEECCCCCCHHCCHHHHHHCCCCCCCCCEEEECC
YDKNIVLKSFLNEREQAEEISKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
FRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIINKPFRYISKLNVERVRRYKYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
KNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
CCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
KIDKEELLQIVDELKEAAEEYTSILSFLVHVEEVEKEINKKEINEDSVILSTIHGVKGME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
FKNVVIVNCNEGNIPYSKADEEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSN
CCCEEEEECCCCCCCCCCCCCCCCCHHHCEEEEEEEEECCCCEEEEECHHHCCCCCCCCH
FIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGEDYVEIGFLDGTKRKFDRNVITK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCHHHH
SNIIKKKSVS
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]