Click here to switch to the map view.

The map label for this gene is yxdJ [H]

Identifier: 148379370

GI number: 148379370

Start: 1520265

End: 1520966

Strand: Direct

Name: yxdJ [H]

Synonym: CBO1394

Alternate gene names: 148379370

Gene position: 1520265-1520966 (Clockwise)

Preceding gene: 148379369

Following gene: 148379371

Centisome position: 39.11

GC content: 28.77

Gene sequence:

>702_bases
ATGAGTTATAAGATAATGATAATAGAAGATGATAAAAATATAGCAAGGCTTTTAGGTGAACATATAGAAAAATATGGATA
CGAAGCACTAGTAGCTAAAGATTTTAAAAAAATATTAGAAACCTTTGAAATAGAAAAACCAAATTTAATTCTTTTAGATG
TTAATTTGCCCAAGTTTGATGGATATTACTGGTGTAGACGAATAAGAGAAAAATCTTTATGCCCTATAATATTTATATCC
GCTAGAGATTCAGAAATGAACCAAGTTATGGCTATTGAAAGTGGAGCAGATGATTATATTACTAAGCCATTTTACTATGA
AGTAGTTTTAGCAAAAATAAAAAGTCAACTAAGAAGAGTATATGGGGATTATGCGGCAAATAGTCAAGTAGAAAGAATAT
TAGATGTAGAAGGATTGCTCTTTTATCCAGAAAGGTTACAAGCCCATTTTAATGAAAAAGAAACAATGCTTTCTAAAAAA
GAGGGAGACCTTTTAGATGAAATGATGAAAATATATCCTAAAGTAGCTACAAGACAAGAATTATTAGAAAAAATATGGGA
CGATACTACTTTTGTAGATGAAAATACTTTAAATGTAAATATAGCAAGACTTAGAAAAAAATTATTAGATTTAGGTATAA
AAGATTCTATAGAGACTGTAAGAGGGGCAGGATATAGATTGCATGTAACTTGGAGGAAATAG

Upstream 100 bases:

>100_bases
TTAAATTTTAAATATAAGTTATTTTAAGAATAAAAAGTTCATCTATAGATGAATTTAGTACAGGCTTTAATGTGTAAAAT
ATAAAACAGGAGTGATATAT

Downstream 100 bases:

>100_bases
AATGAAAATTTTTATCAAAAATAATAAGGGCGTCATAATATTATTTATACTAAATTTTATGATACTATTTAGCTTATACA
ATCTAATGGGTGGATTTGAG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNLPKFDGYYWCRRIREKSLCPIIFIS
ARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYGDYAANSQVERILDVEGLLFYPERLQAHFNEKETMLSKK
EGDLLDEMMKIYPKVATRQELLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLHVTWRK

Sequences:

>Translated_233_residues
MSYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNLPKFDGYYWCRRIREKSLCPIIFIS
ARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYGDYAANSQVERILDVEGLLFYPERLQAHFNEKETMLSKK
EGDLLDEMMKIYPKVATRQELLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLHVTWRK
>Mature_232_residues
SYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNLPKFDGYYWCRRIREKSLCPIIFISA
RDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYGDYAANSQVERILDVEGLLFYPERLQAHFNEKETMLSKKE
GDLLDEMMKIYPKVATRQELLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLHVTWRK

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=31.304347826087, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=34.2222222222222, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=31.1111111111111, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=29.9107142857143, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=30.6306306306306, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790552, Length=227, Percent_Identity=32.5991189427313, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=31.2775330396476, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=26.9058295964126, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=29.0748898678414, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693140, Length=228, Percent_Identity=30.7017543859649, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=28.1938325991189, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=29.9559471365639, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=28.3261802575107, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=27.9475982532751, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27417; Mature: 27286

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNLPKFD
CCEEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
GYYWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRV
HHHHHHHHHHCCCCCEEEEECCCCCCHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YGDYAANSQVERILDVEGLLFYPERLQAHFNEKETMLSKKEGDLLDEMMKIYPKVATRQE
HHHHCCCHHHHHHHCCCCEEECHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLHVTWRK
HHHHHCCCCEEECCCCCEEEHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECC
>Mature Secondary Structure 
SYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNLPKFD
CEEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
GYYWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRV
HHHHHHHHHHCCCCCEEEEECCCCCCHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YGDYAANSQVERILDVEGLLFYPERLQAHFNEKETMLSKKEGDLLDEMMKIYPKVATRQE
HHHHCCCHHHHHHHCCCCEEECHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLHVTWRK
HHHHHCCCCEEECCCCCEEEHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377 [H]