Click here to switch to the map view.

The map label for this gene is tsr [C]

Identifier: 148378402

GI number: 148378402

Start: 468193

End: 470247

Strand: Reverse

Name: tsr [C]

Synonym: CBO0399

Alternate gene names: 148378402

Gene position: 470247-468193 (Counterclockwise)

Preceding gene: 148378403

Following gene: 148378399

Centisome position: 12.1

GC content: 28.61

Gene sequence:

>2055_bases
ATGAAACTTAATTTTAAAAGTATTAAAAATTTAATTTTATGTACTATCTTACCACTAACTATATTATCTATGGTTTTTTT
ATCCATTTTAAGTTATAGTAATTCTAAAAACATAATTTCCAATGAGATAGAAGATAAGATGAAATTCCAGACTAAGGCTA
TAAGTGAAAATATAGAAAAATCATTATTAAGTCATAAAAAAATAGCTGAAACTCTTTCTAAAACTGTAGAATCTTCAAAG
GATATTATGCCTAAAGATACTTACAAAAATATAGTTGGAAATTTTATAAAGACTAATGATGAGACCTTTGGAACAGGTAT
ATGGTTCGAACCTTACAAATTTAATGCCAAAGAAAAGTTTTTTGGCCCTTATTGTTTTAAAGACGGTAACAAAATAGTTT
ACACCGATAAGTATAGTACCGAATCTTATAATTATATGAATTATGATTGGTATAAATCAGCTAAATCTTCTACTGCTTCA
TGTGTCTGGTCAAAACCTTATTTAGATGAACTTAGTAATATAACTATGGTATCAACTTCTGCTGCATTTAAGGATAAAAG
TGGTAATTTTCTTGGAGTGGCTACTGCTGATATAAACTTAGATCGTCTACAAAAAATGATAGCTAATGTGAAGTTTGGTA
AGACAGGTAAAGCTATATTATTAGATAAAGACGGTAATTACATAACTAATCCTAACAAAAGTAAGATTGTAAAGATGAAC
ATTACAAAAGAAACTGAAAATAGTTTATCAACTTTAGGAAAGGAAATGCTATCTAATAAAAAAGGAACAGGTACATATAA
AGATGGAGAGGTAAAAAAATTAGTTTATTATGATTCTATACCTGAAACTGGTTGGATTATAGCTTTATCCATAGATCAAT
CAGAAGTTACTGCCCCTTTAAAACAACTTTTAATAAAAAGCATAGCGTTTATATTAATTGCTTTAGCTCTAATAATTATA
TTTATTCTATGGTTTAGCAATTACTTAACTAAAAATATAAACAGAGTTAACATATTTTCAGAAACTATCTCTAATGGAGA
TTTAACTAAATCATTATCCATAGATAGCAAAGATGAATTAGGAGCCATGGGTAAAAATTTAAATAGTATGAAAAACACCC
TAAATAATATAATAAATAATTTTAATATAAGCCTTAAAGATATAGTATCTATATCCGAAGAATTATCTGCTAGTGCTGAA
CAAACCGAAAGTGCTTCAGATCAAATAGCACAATCTATATCTGATATAGCAACTGGAAGTGAAACTCAATCAAAAACTTC
TCAAGATTCCGTTAAAAATTTAGAAGAAATATATAAAGGCATGGAACAAATATCTGACAATGTTCAATCTGTTACTAACT
ACTCCATGGCAACTTATAAAAAGGCTGAAGAAGGTAATATAACGGTATCTACGGCTATAAATAAAATGAAAGATATAGAA
GAAAGCGTAATAGACTCTGCAAATATTGTAAATACACTAGAAGAAAAATCAAATAATATAGATAATATAGTTTCCCTAAT
AACATCTATTTCAGAGCAAACAAATTTATTAGCACTGAATGCAGCTATAGAGGCAGCCCGTGCAGGAGAAGCTGGTAAAG
GTTTTGCAGTGGTTGCAGAAGAGGTAAGAAAATTAGCTGAAGAATCTTCTGCCTCAGCTGGAAGTATTGGGTATATCATA
AAAGAAGTTCAAAGTGATATTACAAAGGTAGTTAACTCCATGAAGATTGAAACTAATAATGTTAATGAAGGAATAGTAAT
AGTACAAAATACTAAGAGCTCTTTTGAAAATATATTATCTAGTATTGATAAAGTCTCTAGAGAAATGCAAGATGTATCTG
CAGTAGTAGAAGAAATAACTGCCAGCACAGAAACTGTTGTAAATTCTTTAGAAAAAATAGACTCAATAATAAAAGAGTCC
AGTAGTAATACACAAAATGTAGCAGCTTCTGCGGAAGAACAAACAGCCATAATGAAAGAAGTAGCTGAAGTTGCAACTAA
GCTCTCTCAAATGTCTTTAAAACTTGAAAAGGATATAAATATATTTAAAATATAA

Upstream 100 bases:

>100_bases
ACACTTTTCTTGTTAATTATATTATATCTATAGTATAATTAACTATTTATAATAATTATTACCCTTATTACAATATAATT
TTTACACAAGGAGATTTGAA

Downstream 100 bases:

>100_bases
ATCTTTAAAGATAATTTACTTTAAAAAATGTATTAAATTAAAAAAGTACTTTTAGGGAACATAAATATCTAAAAAATAAT
TAGTATACAGATGTTAGTAT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 684; Mature: 684

Protein sequence:

>684_residues
MKLNFKSIKNLILCTILPLTILSMVFLSILSYSNSKNIISNEIEDKMKFQTKAISENIEKSLLSHKKIAETLSKTVESSK
DIMPKDTYKNIVGNFIKTNDETFGTGIWFEPYKFNAKEKFFGPYCFKDGNKIVYTDKYSTESYNYMNYDWYKSAKSSTAS
CVWSKPYLDELSNITMVSTSAAFKDKSGNFLGVATADINLDRLQKMIANVKFGKTGKAILLDKDGNYITNPNKSKIVKMN
ITKETENSLSTLGKEMLSNKKGTGTYKDGEVKKLVYYDSIPETGWIIALSIDQSEVTAPLKQLLIKSIAFILIALALIII
FILWFSNYLTKNINRVNIFSETISNGDLTKSLSIDSKDELGAMGKNLNSMKNTLNNIINNFNISLKDIVSISEELSASAE
QTESASDQIAQSISDIATGSETQSKTSQDSVKNLEEIYKGMEQISDNVQSVTNYSMATYKKAEEGNITVSTAINKMKDIE
ESVIDSANIVNTLEEKSNNIDNIVSLITSISEQTNLLALNAAIEAARAGEAGKGFAVVAEEVRKLAEESSASAGSIGYII
KEVQSDITKVVNSMKIETNNVNEGIVIVQNTKSSFENILSSIDKVSREMQDVSAVVEEITASTETVVNSLEKIDSIIKES
SSNTQNVAASAEEQTAIMKEVAEVATKLSQMSLKLEKDINIFKI

Sequences:

>Translated_684_residues
MKLNFKSIKNLILCTILPLTILSMVFLSILSYSNSKNIISNEIEDKMKFQTKAISENIEKSLLSHKKIAETLSKTVESSK
DIMPKDTYKNIVGNFIKTNDETFGTGIWFEPYKFNAKEKFFGPYCFKDGNKIVYTDKYSTESYNYMNYDWYKSAKSSTAS
CVWSKPYLDELSNITMVSTSAAFKDKSGNFLGVATADINLDRLQKMIANVKFGKTGKAILLDKDGNYITNPNKSKIVKMN
ITKETENSLSTLGKEMLSNKKGTGTYKDGEVKKLVYYDSIPETGWIIALSIDQSEVTAPLKQLLIKSIAFILIALALIII
FILWFSNYLTKNINRVNIFSETISNGDLTKSLSIDSKDELGAMGKNLNSMKNTLNNIINNFNISLKDIVSISEELSASAE
QTESASDQIAQSISDIATGSETQSKTSQDSVKNLEEIYKGMEQISDNVQSVTNYSMATYKKAEEGNITVSTAINKMKDIE
ESVIDSANIVNTLEEKSNNIDNIVSLITSISEQTNLLALNAAIEAARAGEAGKGFAVVAEEVRKLAEESSASAGSIGYII
KEVQSDITKVVNSMKIETNNVNEGIVIVQNTKSSFENILSSIDKVSREMQDVSAVVEEITASTETVVNSLEKIDSIIKES
SSNTQNVAASAEEQTAIMKEVAEVATKLSQMSLKLEKDINIFKI
>Mature_684_residues
MKLNFKSIKNLILCTILPLTILSMVFLSILSYSNSKNIISNEIEDKMKFQTKAISENIEKSLLSHKKIAETLSKTVESSK
DIMPKDTYKNIVGNFIKTNDETFGTGIWFEPYKFNAKEKFFGPYCFKDGNKIVYTDKYSTESYNYMNYDWYKSAKSSTAS
CVWSKPYLDELSNITMVSTSAAFKDKSGNFLGVATADINLDRLQKMIANVKFGKTGKAILLDKDGNYITNPNKSKIVKMN
ITKETENSLSTLGKEMLSNKKGTGTYKDGEVKKLVYYDSIPETGWIIALSIDQSEVTAPLKQLLIKSIAFILIALALIII
FILWFSNYLTKNINRVNIFSETISNGDLTKSLSIDSKDELGAMGKNLNSMKNTLNNIINNFNISLKDIVSISEELSASAE
QTESASDQIAQSISDIATGSETQSKTSQDSVKNLEEIYKGMEQISDNVQSVTNYSMATYKKAEEGNITVSTAINKMKDIE
ESVIDSANIVNTLEEKSNNIDNIVSLITSISEQTNLLALNAAIEAARAGEAGKGFAVVAEEVRKLAEESSASAGSIGYII
KEVQSDITKVVNSMKIETNNVNEGIVIVQNTKSSFENILSSIDKVSREMQDVSAVVEEITASTETVVNSLEKIDSIIKES
SSNTQNVAASAEEQTAIMKEVAEVATKLSQMSLKLEKDINIFKI

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=379, Percent_Identity=25.8575197889182, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1787690, Length=359, Percent_Identity=26.4623955431755, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1788194, Length=359, Percent_Identity=26.4623955431755, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788195, Length=300, Percent_Identity=25.3333333333333, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI1789453, Length=418, Percent_Identity=24.4019138755981, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR003122
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR022094 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 75494; Mature: 75494

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNFKSIKNLILCTILPLTILSMVFLSILSYSNSKNIISNEIEDKMKFQTKAISENIEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SLLSHKKIAETLSKTVESSKDIMPKDTYKNIVGNFIKTNDETFGTGIWFEPYKFNAKEKF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHH
FGPYCFKDGNKIVYTDKYSTESYNYMNYDWYKSAKSSTASCVWSKPYLDELSNITMVSTS
CCCCEEECCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCEEECCHHHHHHCCCEEEECC
AAFKDKSGNFLGVATADINLDRLQKMIANVKFGKTGKAILLDKDGNYITNPNKSKIVKMN
HHHCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEE
ITKETENSLSTLGKEMLSNKKGTGTYKDGEVKKLVYYDSIPETGWIIALSIDQSEVTAPL
ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHH
KQLLIKSIAFILIALALIIIFILWFSNYLTKNINRVNIFSETISNGDLTKSLSIDSKDEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCEEECCCCCHHHH
GAMGKNLNSMKNTLNNIINNFNISLKDIVSISEELSASAEQTESASDQIAQSISDIATGS
HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ETQSKTSQDSVKNLEEIYKGMEQISDNVQSVTNYSMATYKKAEEGNITVSTAINKMKDIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHH
ESVIDSANIVNTLEEKSNNIDNIVSLITSISEQTNLLALNAAIEAARAGEAGKGFAVVAE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCHHHHHH
EVRKLAEESSASAGSIGYIIKEVQSDITKVVNSMKIETNNVNEGIVIVQNTKSSFENILS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCHHHHHHHHH
SIDKVSREMQDVSAVVEEITASTETVVNSLEKIDSIIKESSSNTQNVAASAEEQTAIMKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHH
VAEVATKLSQMSLKLEKDINIFKI
HHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MKLNFKSIKNLILCTILPLTILSMVFLSILSYSNSKNIISNEIEDKMKFQTKAISENIEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SLLSHKKIAETLSKTVESSKDIMPKDTYKNIVGNFIKTNDETFGTGIWFEPYKFNAKEKF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHH
FGPYCFKDGNKIVYTDKYSTESYNYMNYDWYKSAKSSTASCVWSKPYLDELSNITMVSTS
CCCCEEECCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCEEECCHHHHHHCCCEEEECC
AAFKDKSGNFLGVATADINLDRLQKMIANVKFGKTGKAILLDKDGNYITNPNKSKIVKMN
HHHCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEE
ITKETENSLSTLGKEMLSNKKGTGTYKDGEVKKLVYYDSIPETGWIIALSIDQSEVTAPL
ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHH
KQLLIKSIAFILIALALIIIFILWFSNYLTKNINRVNIFSETISNGDLTKSLSIDSKDEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCEEECCCCCHHHH
GAMGKNLNSMKNTLNNIINNFNISLKDIVSISEELSASAEQTESASDQIAQSISDIATGS
HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ETQSKTSQDSVKNLEEIYKGMEQISDNVQSVTNYSMATYKKAEEGNITVSTAINKMKDIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHH
ESVIDSANIVNTLEEKSNNIDNIVSLITSISEQTNLLALNAAIEAARAGEAGKGFAVVAE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCHHHHHH
EVRKLAEESSASAGSIGYIIKEVQSDITKVVNSMKIETNNVNEGIVIVQNTKSSFENILS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCHHHHHHHHH
SIDKVSREMQDVSAVVEEITASTETVVNSLEKIDSIIKESSSNTQNVAASAEEQTAIMKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHH
VAEVATKLSQMSLKLEKDINIFKI
HHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA