Click here to switch to the map view.

The map label for this gene is pchR [H]

Identifier: 148378302

GI number: 148378302

Start: 353730

End: 354767

Strand: Direct

Name: pchR [H]

Synonym: CBO0300

Alternate gene names: 148378302

Gene position: 353730-354767 (Clockwise)

Preceding gene: 148378301

Following gene: 148378303

Centisome position: 9.1

GC content: 28.03

Gene sequence:

>1038_bases
ATGAAGCATAAATTTCATATAAATACAAAACAAGGATGTTCATCAATGATTATGCAATATTCATCAATACGTACCCAATT
TGCAACGATACGAGATTCTATGAATTTTAATGATGAAAAAGAAGTTATATATGATATAAAGCCCCAATATGGTAAAGGCT
GTATAAAATTTTATAAACTTATGGGAAATGTGATGCTTATAATTTATGATACAATATTTAATCATGATATGATAACAGAA
TTTGACTTATCGGAAGAATATTTTGAAATAGAATATTGTGTTGATGGTTGCTTAAATATTCATGAAGATAAAGTAGGAAA
TATGTGTCTTTCTAAAAATGAACTTTCCATATCAATGTCCCGTGAAACTTGCGGAAAGGTGATTAATTGTGCAGGTCAGA
AATATCAAGGGATTTCAATTACTACTGAAAAATCAGCTATAGCATCATATTTTGGTAGCTGTGGGATTGAGCTATGGGAG
GACACAATAGAGGAATTAGAGAATGAACTTAGAAATCAGTATTATCAAGGAATAAATGTTTCTCTTGAAATTGCAAACAT
ATTTTTACAAATATTTAATTGCAGTTTACCAGAAAAATCGAAAATTTTATTTTTTGAAAGTAAGGTAATGGAAATATTAT
CAAAGATAGTATCCTATGAAATTCTAGGGACAAATAAAATAAATCAATTGCAGATGGATGAATTTGAAATTAATCAGATA
AAAAAGATACCAGAGGTGTTAATGAAAAATCTATATGAGCTTCCAACAGTAAATATTCTATCTAAGCAGCTAGCAATAAA
TAAGAATAAATTAGCAAAGGGATTTAAAGTAATATATGGTGATACTATATTCAGATATCACAGAAAAATGTGTCTGGAGC
GTGCTGCTATATTATTAATAGATACCGACAAATCTATTAATGAAATTGCTCTTGATGTAGGATATTCAAATCCAAGTAAT
TTTTGTTATGCTTTTAAAAAGGAGTTTGGAGTAACCCCTTTGCAATATAAAGATGATTCCTTAAAACTTGTAAATTAA

Upstream 100 bases:

>100_bases
ATAGTGTGTTGTAATATATTAAATATGAATTATATAAACATTGAAATAAATCATAGTAAGCAGAAAAAGATTTATTGAGG
ACAAGAAAGGAGCGCATAGA

Downstream 100 bases:

>100_bases
TTTTTTCCATAATTTTTATTTGTTTAAATTGCCACAGGTATAGTACTTGTGGTTTATTTTATTGGGGAAATTTAGTTATC
TACTCATATATTTTGCAATA

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKHKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNDEKEVIYDIKPQYGKGCIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMSRETCGKVINCAGQKYQGISITTEKSAIASYFGSCGIELWE
DTIEELENELRNQYYQGINVSLEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQMDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKVIYGDTIFRYHRKMCLERAAILLIDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVTPLQYKDDSLKLVN

Sequences:

>Translated_345_residues
MKHKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNDEKEVIYDIKPQYGKGCIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMSRETCGKVINCAGQKYQGISITTEKSAIASYFGSCGIELWE
DTIEELENELRNQYYQGINVSLEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQMDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKVIYGDTIFRYHRKMCLERAAILLIDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVTPLQYKDDSLKLVN
>Mature_345_residues
MKHKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNDEKEVIYDIKPQYGKGCIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMSRETCGKVINCAGQKYQGISITTEKSAIASYFGSCGIELWE
DTIEELENELRNQYYQGINVSLEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQMDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKVIYGDTIFRYHRKMCLERAAILLIDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVTPLQYKDDSLKLVN

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39867; Mature: 39867

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNDEKEVIYDIKPQYGKGCIKFYKL
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH
MGNVMLIIYDTIFNHDMITEFDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMS
HCCEEEEEEHHHHCCCCEEEECCCCHHEEHHHHHHHHCCCCHHHHCCEEECCCCEEEEEC
RETCGKVINCAGQKYQGISITTEKSAIASYFGSCGIELWEDTIEELENELRNQYYQGINV
HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCE
SLEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQMDEFEINQI
EEHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCCCCCHHHHHHH
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKVIYGDTIFRYHRKMCLERAAILLI
HHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCEEEECHHHHHHHHHHHHHHCEEEEE
DTDKSINEIALDVGYSNPSNFCYAFKKEFGVTPLQYKDDSLKLVN
ECCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCEEECC
>Mature Secondary Structure
MKHKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFNDEKEVIYDIKPQYGKGCIKFYKL
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH
MGNVMLIIYDTIFNHDMITEFDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNELSISMS
HCCEEEEEEHHHHCCCCEEEECCCCHHEEHHHHHHHHCCCCHHHHCCEEECCCCEEEEEC
RETCGKVINCAGQKYQGISITTEKSAIASYFGSCGIELWEDTIEELENELRNQYYQGINV
HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCE
SLEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQMDEFEINQI
EEHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCCCCCHHHHHHH
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKVIYGDTIFRYHRKMCLERAAILLI
HHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCEEEECHHHHHHHHHHHHHHCEEEEE
DTDKSINEIALDVGYSNPSNFCYAFKKEFGVTPLQYKDDSLKLVN
ECCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]